Islam MS, Peng SB, Visperas RM, Ereful N, Bhuiya MSU, Julfiquar AW. Lodging-related morphological traits of hybrid rice in a tropical irrigated ecosystem. Field Crop Res. 2007;101(2):240–8.
Google Scholar
Ma DL, Xie RZ, Liu X, Niu XK, Hou P, Wang KR, Lu YL, Li SK. Lodging-Related stalk characteristics of maize varieties in China since the 1950s. Crop Sci. 2014;54(6):2805–14.
Google Scholar
Zhao B, Li K, Wang M, Liu Z, Yin P, Wang W, Li Z, Li X, Zhang L, Han Y, et al. Genetic basis of maize stalk strength decoded via linkage and association mapping. Plant J. 2024;117(5):1558–73.
Google Scholar
Pinthus MJ. Lodging in wheat, barley, and oats: the phenomenon, its causes, and preventive measures. Adv Agron. 1974;25:209–63.
Google Scholar
Xue J, Gao S, Hou LY, Li LL, Ming B, Xie RZ, Wang KR, Hou P, Li SK. Physiological influence of stalk rot on maize lodging after physiological maturity. Agronomy-Basel. 2021;11(11):2271.
Google Scholar
Shah AN, Tanveer M, Anjum SA, Iqbal J, Ahmad R. Lodging stress in cereal—effects and management: an overview. Environ Sci Pollut R. 2017;24(6):5222–37.
Google Scholar
Li Q, Fu CF, Liang CL, Ni XJ, Zhao XH, Chen M, Ou LJ. Crop lodging and the roles of Lignin, Cellulose, and hemicellulose in lodging resistance. Agronomy-Basel. 2022;12(8):1795.
Google Scholar
Rehman M, Luo D, Mubeen S, Pan J, Cao S, Saeed W, Chen P. Progress in agronomic crops lodging resistance and prevention: A review. J Agro Crop Sci. 2024;210(6):e12785.
Yang J, Li M, Yin Y, Liu Y, Gan X, Mu X, Li H, Li J, Li H, Zheng J, et al. Spatial accumulation of lignin monomers and cellulose underlying stalk strength in maize. Plant Physiol Bioch. 2024;214:108918.
Zhang Z, Zhang X, Lin Z, Wang J, Liu H, Zhou L, Zhong S, Li Y, Zhu C, Lai J, et al. A large transposon insertion in the stiff1 promoter increases stalk strength in maize. Plant Cell. 2020;32(1):152–65.
Google Scholar
Wang B, Yang M, Guo H, Wang J, Wang Z, Lu H, Qin G, Chen J. Genome-wide association study for stalk lodging resistance related traits in maize (Zea Mays L). BMC Genomics. 2024;25(1):19.
Sekhon RS, Joyner CN, Ackerman AJ, McMahan CS, Cook DD, Robertson DJ. Stalk bending strength is strongly associated with maize stalk lodging incidence across multiple environments. Field Crop Res. 2020;249:107737.
Google Scholar
Xu SH, Tang X, Zhang XM, Wang HM, Ji WD, Xu CW, Yang ZF, Li PC. Genome-wide association study identifies novel candidate loci or genes stalk in maize. Crop J. 2023;11(1):220–7.
Google Scholar
Hu H, Meng Y, Wang H, Liu H, Chen S. Identifying quantitative trait loci and determining closely related stalk traits for rind penetrometer resistance in a high-oil maize population. Theor Appl Genet. 2012;124(8):1439–47.
Google Scholar
Zhang YL, Liang TH, Chen M, Zhang YC, Wang T, Lin HJ, Rong TZ, Zou CY, Liu P, Lee M, et al. Genetic dissection of stalk lodging-related traits using an IBM Syn10 DH population in maize across three environments (Zea Mays L). Mol Genet Genomics. 2019;294(5):1277–88.
Google Scholar
Liu XG, Hu XJ, Li K, Liu ZF, Wu YJ, Wang HW, Huang CL. Genetic mapping and genomic selection for maize stalk strength. BMC Plant Biol. 2020;20(1):196.
Sun Q, Liu X, Yang J, Liu W, Du Q, Wang H, Fu C, Li WX. MicroRNA528 affects lodging resistance of maize by regulating lignin biosynthesis under Nitrogen-Luxury conditions. Mol Plant. 2018;11(6):806–14.
Google Scholar
Zhao BB, Xu MY, Zhao YP, Li YY, Xu H, Li CY, Kong DX, Xie YR, Zheng ZG, Wang BB, et al. Overexpression of ZmSPL12 confers enhanced lodging resistance through transcriptional regulation of D1 in maize. Plant Biotechnol J. 2022;20(4):622–4.
Google Scholar
Chen S, Fan X, Song M, Yao S, Liu T, Ding W, Liu L, Zhang M, Zhan W, Yan L, et al. Cryptochrome 1b represses Gibberellin signaling to enhance lodging resistance in maize. Plant Physiol. 2024;194(2):902–17.
Google Scholar
Landi P, Sanguineti M, Darrah L, Giuliani M, Salvi S, Conti S, Tuberosa RJM. Detection of QTLs forvertical root pulling resistance in maize and overlap with QTLs for root traits in hydroponics. Maydica. 2002;47:233–43.
Landi P, Sanguineti M, Liu C, Li Y, Wang T, Giuliani S, Bellotti M, Salvi S, Tuberosa R. Root-ABA1 QTL affects root lodging, grain yield, and other agronomic traits in maize grown under well-watered and water-stressed conditions. J Exp Bot. 2006;58(2):319–26.
Google Scholar
Farkhari M, Krivanek A, Xu Y, Rong T, Naghavi MR, Samadi BY, Lu Y, Lübberstedt T. Root-lodging resistance in maize as an example for high‐throughput genetic mapping via single nucleotide polymorphism‐based selective genotyping. Plant Breeding. 2012;132(1):90–8.
Google Scholar
Zheng Z, Wang B, Zhuo C, Xie Y, Zhang X, Liu Y, Zhang G, Ding H, Zhao B, Tian M, et al. Local auxin biosynthesis regulates Brace root angle and lodging resistance in maize. New Phytol. 2023;238:142–54.
Google Scholar
Xie J, Guo G, Wang Y, Hu T, Wang L, Li J, Qiu D, Li Y, Wu Q, Lu P, et al. A rare single nucleotide variant in Pm5e confers powdery mildew resistance in common wheat. New Phytol. 2020;228(3):1011–26.
Google Scholar
Lin G, Chen H, Tian B, Sehgal SK, Singh L, Xie J, Rawat N, Juliana P, Singh N, Shrestha S, et al. Cloning of the broadly effective wheat leaf rust resistance gene Lr42 transferred from Aegilops Tauschii. Nat Commun. 2022;13(1):3044.
Wang Z, Niu Y, Xie Y, Huang C, Yung W-S, Li M-W, Wong F-L, Lam H-M. QTL mapping and BSR-seq revealed loci and candidate genes associated with the sporadic multifoliolate phenotype in soybean (Glycine max). Theor Appl Genet. 2024;137(12):262.
Shi L, Jiang C, He Q, Habekuß A, Ordon F, Luan H, Shen H, Liu J, Feng Z, Zhang J, et al. Bulked Segregant RNA-sequencing (BSR-seq) identified a novel rare allele of eIF4E effective against multiple isolates of BaYMV/BaMMV. Theor Appl Genet. 2019;132(6):1777–88.
Google Scholar
Kim D, Landmead B, Salzberg SL. HISAT: a fast spliced aligner with low memory requirements. Nat Methods. 2015;12(4):357–U121.
Google Scholar
McKenna A, Hanna M, Banks E, Sivachenko A, Cibulskis K, Kernytsky A, Garimella K, Altshuler D, Gabriel S, Daly M, et al. The genome analysis toolkit: A mapreduce framework for analyzing next-generation DNA sequencing data. Genome Res. 2010;20(9):1297–303.
Google Scholar
Mansfeld BN, Grumet R. QTLseqr: an R package for bulk Segregant analysis with Next-Generation sequencing. Plant Genome. 2018;11(2):180006.
Schenk JJ, Becklund LE, Carey SJ, Fabre PP. What is the modified CTAB protocol? Characterizing modifications to the CTAB DNA extraction protocol. Appl Plant Sci. 2023;11(3):e11517.
Google Scholar
Meng L, Li H, Zhang L, Wang J. QTL icimapping: integrated software for genetic linkage map construction and quantitative trait locus mapping in biparental populations. Crop J. 2015;3(3):269–83.
Google Scholar
Chen L, Luo J, Jin M, Yang N, Liu X, Peng Y, Li W, Phillips A, Cameron B, Bernal JS, et al. Genome sequencing reveals evidence of adaptive variation in the genus Zea. Nat Genet. 2022;54(11):1736–45.
Google Scholar
Langmead B, Salzberg SLJN. Fast gapped-read alignment with bowtie 2. Nat Methods. 2012;9(4):357–9.
Google Scholar
Li H, Peng Z, Yang X, Wang W, Fu J, Wang J, Han Y, Chai Y, Guo T, Yang N. Genome-wide association study dissects the genetic architecture of oil biosynthesis in maize kernels. Nat Genet. 2013;45(1):43–50.
Google Scholar
Liu S, Yeh CT, Tang HM, Nettleton D, Schnable PS. Gene mapping via bulked Segregant RNA-Seq (BSR-Seq). PLoS ONE. 2012;7(5):e36406.
Google Scholar
Mounier E, Pervent M, Ljung K, Gojon A, Nacry P. Auxin-mediated nitrate signalling by NRT1.1 participates in the adaptive response of Arabidopsis root architecture to the Spatial heterogeneity of nitrate availability. Plant Cell Environ. 2013;37(1):162–74.
Google Scholar
Cao H, Liu Z, Guo J, Jia Z, Shi Y, Kang K, Peng W, Wang Z, Chen L, Neuhaeuser B, et al. ZmNRT1.1B (ZmNPF6.6) determines nitrogen use efficiency via regulation of nitrate transport and signalling in maize. Plant Biotechnol J. 2024;22(2):316–29.
Google Scholar
Hostetler AN, Erndwein L, Reneau JW, Stager A, Tanner HG, Cook D, Sparks EE. Multiple Brace root phenotypes promote anchorage and limit root lodging in maize. Plant Cell Environ. 2022;45(5):1573–83.
Google Scholar
Imran M, Sun X, Hussain S, Rana MS, Saleem MH, Riaz M, Tang X, Khan I, Hu C. Molybdenum supply increases root system growth of winter wheat by enhancing nitric oxide accumulation and expression of NRT genes. Plant Soil. 2020;459(1–2):235–48.
Hu B, Wang W, Ou S, Tang J, Li H, Che R, Zhang Z, Chai X, Wang H, Wang YJNG. Variation in NRT1. 1B contributes to nitrate-use divergence between rice subspecies. Nat Genet. 2015;47(7):834–8.
Google Scholar
Fan X, Feng H, Tan Y, Xu Y, Miao Q, Xu GJJIPB. A putative 6-transmembrane nitrate transporter OsNRT1. 1b plays a key role in rice under low nitrogen. J Integr Plant Biol. 2016;58(6):590–9.
Google Scholar
Yin NW, Li B, Liu X, Liang Y, Lian JP, Xue YF, Qu CM, Lu K, Wei LJ, Wang R, et al. Two types of cinnamoyl-CoA reductase function divergently in accumulation of lignins, flavonoids and glucosinolates and enhance lodging resistance in brassica Napus. Crop J. 2022;10(3):647–60.
Google Scholar
Sakamoto S, Somssich M, Nakata MT, Unda F, Atsuzawa K, Kaneko Y, Wang T, Bagman AM, Gaudinier A, Yoshida K, et al. Complete substitution of a secondary cell wall with a primary cell wall in Arabidopsis. Nat Plants. 2018;4(10):777–83.
Google Scholar
Xiao C, Barnes WJ, Zamil MS, Yi H, Puri VM, Anderson CT. Activation tagging of arabidopsispolygalacturonase INVOLVED IN EXPANSION2promotes hypocotyl elongation, leaf expansion, stem lignification, mechanical stiffening, and lodging. Plant J. 2017;89(6):1159–73.
Google Scholar
Safran J, Tabi W, Ung V, Lemaire A, Habrylo O, Bouckaert J, Rouffle M, Voxeur A, Pongrac P, Bassard S, et al. Plant polygalacturonase structures specify enzyme dynamics and processivities to fine-tune cell wall pectins. Plant Cell. 2023;35(8):3073–91.
Google Scholar