Category: 7. Science

  • Were humans banished by aliens? Earth might be trapped inside a giant space bubble, discover scientists

    Were humans banished by aliens? Earth might be trapped inside a giant space bubble, discover scientists

    For decades, humans have imagined that the universe might be filled with intelligent life. Yet despite billions of stars and galaxies, we have found no clear evidence of aliens. Now, scientists suggest a possible reason: Earth may be located in an enormous cosmic void—a vast, sparsely populated region of space. If true, our planet could be unusually isolated from the denser regions of the universe, giving the appearance that humanity is alone or even “ostracized” in the cosmic landscape.

    This theory, presented at the Royal Astronomical Society’s National Astronomy Meeting, has been led by Dr. Indranil Banik of the University of Portsmouth. The discovery could have far-reaching implications for our understanding of the universe’s structure and expansion.

    Dr. Banik’s team explained that the local void, also referred to as an underdensity, could be roughly one billion light-years wide and about 20% less dense than the average universe. This sparsity of matter would affect how we perceive galaxy movements, potentially making it appear that the universe is expanding faster than it actually is.

    Possible Solution to the Hubble Tension

    The idea of a local cosmic void provides a potential explanation for the long-standing Hubble Tension, which arises from discrepancies in measuring the universe’s expansion rate. Observations of distant galaxies suggest a slower expansion, while local measurements indicate a faster rate. According to Dr. Banik, if the Milky Way is located inside a vast void, gravitational effects from denser surrounding regions would pull matter outward, making local velocities seem larger.

    “This model, based on two decades of baryon acoustic oscillation data, is significantly more likely than a void-free model,” Dr. Banik said, highlighting the consistency of his team’s findings with patterns left from the Big Bang.

    Implications for Cosmology

    If confirmed, the local void theory challenges the assumption that the universe is uniform on large scales. It would also have consequences for predictions about the universe’s future, including the timing of the so-called “heat death,” when energy is evenly distributed and no significant cosmic activity occurs.While the idea of humans living in a cosmic void is still debated, Banik’s research strengthens the possibility that our region of the universe may be lonelier than previously thought. By analyzing oscillations caused by the early universe, his team has provided evidence that supports the existence of this massive void.

    Life in the Void

    Living in a cosmic void could have indirect implications for humanity, as it affects how we perceive the universe around us. Although the void does not directly indicate alien activity or ostracization, it does suggest that our cosmic neighborhood is isolated compared to denser regions of the universe.

    Further research, including comparisons with supernova data, will be necessary to fully validate this theory and understand its consequences for cosmology. For now, Earth’s place in a giant cosmic void remains a compelling possibility that may reshape how scientists view the universe.

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  • VIPER: A High-resolution Multimode Fiber-fed VIPA Spectrograph Concept For Characterizing Exoplanet Atmospheric Escape

    VIPER: A High-resolution Multimode Fiber-fed VIPA Spectrograph Concept For Characterizing Exoplanet Atmospheric Escape

    3D hydrodynamic simulation of atmospheric escape from Ref. 8, for a system similar to HAT-P-67 b. Figure 2a shows the gas density. The star is in the center of the plot and the observer is looking from the left. — astro-ph.IM

    An increasing number of applications in exoplanetary science require spectrographs with high resolution and high throughput without the need for a broad spectral range.

    Examples include the search for biosignatures through the detection of the oxygen A-band at 760 nm, and the study of atmospheric escape through the helium 1083 nm triplet. These applications align well with the capabilities of a spectrograph based on a Virtually Imaged Phased Array (VIPA), a high-throughput dispersive element that is essentially a modified Fabry-Perot etalon.

    We are developing VIPER, a high-resolution, narrowband, multimode fiber-fed VIPA spectrograph specifically designed to observe the helium 1083 nm triplet absorption line in the atmospheres of gaseous exoplanets. VIPER will achieve a resolving power of 300,000 over a wavelength range of 25 nm, and will be cross-dispersed by an echelle grating. VIPER is intended for operation on the 1.5 m Tillinghast Telescope and potentially on the 6.5 m MMT, both located at the Fred Lawrence Whipple Observatory (FLWO) on Mount Hopkins, Arizona, USA.

    In this paper, we present VIPER’s instrument requirements, derived from the primary science goal of detecting anisotropic atmospheric escape from exoplanets. We discuss the design methodology for VIPA-based spectrographs aimed at maximizing throughput and diffraction efficiency, and we derive a wave-optics-based end-to-end model of the spectrograph to simulate the intensity distribution at the detector.

    We present an optical design for VIPER and highlight the potential of VIPA-based spectrographs for advancing exoplanetary science.

    Matthew C. H. Leung, David Charbonneau, Andrew Szentgyorgyi, Colby Jurgenson, Morgan MacLeod, Surangkhana Rukdee, Shreyas Vissapragada, Fabienne Nail, Joseph Zajac, Andrea K. Dupree

    Comments: 39 pages, 27 figures, SPIE Optics + Photonics 2025
    Subjects: Instrumentation and Methods for Astrophysics (astro-ph.IM); Earth and Planetary Astrophysics (astro-ph.EP); Solar and Stellar Astrophysics (astro-ph.SR)
    Cite as: arXiv:2508.20169 [astro-ph.IM](or arXiv:2508.20169v1 [astro-ph.IM] for this version)
    https://doi.org/10.48550/arXiv.2508.20169
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    Submission history
    From: Matthew Leung
    [v1] Wed, 27 Aug 2025 18:00:04 UTC (4,856 KB)
    https://arxiv.org/abs/2508.20169
    Astrobiology

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  • Study reveals how dormant E. coli bacteria survive antibiotics

    Study reveals how dormant E. coli bacteria survive antibiotics

    A groundbreaking study by researchers from Wuhan University, York University (UK), and Peking University has uncovered how Escherichia coli (E. coli) persister bacteria survive antibiotics by protecting their genetic instructions. The work, published in Nature Microbiology, offers new hope for tackling chronic, recurring infections.

    Persister bacteria, which enter a dormant state to survive antibiotics that target active cells, are linked to over 20% of chronic infections and resist current treatments. Understanding their survival mechanisms could lead to new ways to combat recurring infections. This study utilized E. coli bacteria as a model and found that prolonged stress leads to the increased formation of aggresomes (membraneless droplets) and the enrichment of mRNA (molecules that carry instructions for making proteins) within them, which enhances the ability of E. coli to survive and recover from stress.

    Key findings

    They used multiple approaches, including imaging, modeling, and transcriptomics, to show that prolonged stress leading to ATP(fuel for all living cells) depletion in Escherichia coli results in increased aggresome formation, their compaction, and enrichment of mRNA within aggresomes compared to the cytosol(the liquid inside of cells). Transcript length was longer in aggresomes compared to the cytosol. Mass spectrometry showed exclusion of mRNA ribonuclease(an enzyme that breaks down RNA) from aggresomes, which was due to negative charge repulsion. Experiments with fluorescent reporters and disruption of aggresome formation showed that mRNA storage within aggresomes promoted translation and was associated with reduced lag phases during growth after stress removal. These findings suggest that mRNA storage within aggresomes confers an advantage for bacterial survival and recovery from stress.

    Future implications

    This breakthrough illuminates how persister cells survive and revive after antibiotic treatment. By targeting aggresomes, new drugs could disrupt this protective mechanism, preventing bacteria from storing mRNA and making them more vulnerable to elimination, thus reducing the risk of infection relapse.

    Source:

    Journal reference:

    Pei, L., et al. (2025) Aggresomes protect mRNA under stress in Escherichia coliNature Microbiology. doi.org/10.1038/s41564-025-02086-5

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  • The Uranus Flagship: Investigating New Paradigms for Outer Solar System Exploration Workshop Summary Report

    The Uranus Flagship: Investigating New Paradigms for Outer Solar System Exploration Workshop Summary Report

    Uranus Flagship Workshop — astro-ph.IM

    This white paper is a summary of the Uranus Flagship Workshop that took place 21 to 23 May 2024 at NASA’s Goddard Space Flight Center. Co-led by Goddard and Johns Hopkins Applied Physics Lab conveners, we had a broad, international, Science Organizing Committee, and a largely early career Local Organizing Committee from APL and GSFC.

    From prior workshops, it was apparent that the community was wildly enthusiastic about starting a mission, but lacked focus on what was possible or where to begin. Thus, the purpose of our workshop was to discuss practical aspects of the next planetary flagship and how we can employ new paradigms to better enable robust outer planet exploration.

    To enable this goal, we introduced the community to the best practices and lessons learned from previous missions and NASA-commissioned studies, and discussed the challenges involved with a mission so far from the Earth/Sun.

    The underlying workshop purpose was to steward the community towards a more practical mission design approach that will enable the development of this mission, as well as future missions, on a shorter cadence by setting expectations and having difficult discussions early in development. Because of the time scales involved in this mission, special effort was made towards early career inclusion and participation.

    Amy Simon, Louise Prockter, Ian Cohen, Kathleen Mandt, Lynnae Quick

    Subjects: Instrumentation and Methods for Astrophysics (astro-ph.IM); Earth and Planetary Astrophysics (astro-ph.EP)
    Cite as: arXiv:2508.21074 [astro-ph.IM] (or arXiv:2508.21074v1 [astro-ph.IM] for this version)
    https://doi.org/10.48550/arXiv.2508.21074
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    Submission history
    From: Amy Simon
    [v1] Mon, 11 Aug 2025 12:57:46 UTC (2,876 KB)
    https://arxiv.org/abs/2508.21074
    Astrobiology,

    Explorers Club Fellow, ex-NASA Space Station Payload manager/space biologist, Away Teams, Journalist, Lapsed climber, Synaesthete, Na’Vi-Jedi-Freman-Buddhist-mix, ASL, Devon Island and Everest Base Camp veteran, (he/him) 🖖🏻

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  • How Stellar Mass And Disc Size Shape The Formation And Migration Of Super-Earths

    How Stellar Mass And Disc Size Shape The Formation And Migration Of Super-Earths

    Growth tracks of a single planet injected at r = 3 AU and t = 104 yr. In the irradiated case (left), this results in the formation of a super-Earth at the inner disc edge for all stellar masses and disc sizes. In the viscous heating case (right), the protoplanet grows into a giant planet for high stellar masses as well as for solar-mass stars with sufficiently large discs. — astro-ph.EP

    The occurrence rate of close-in super-Earths is higher around M-dwarfs compared to stars of higher masses.

    In this work we aim to understand how the super-Earth population is affected by both the stellar mass, the size of the protoplanetary disc, and viscous heating. We utilise a standard protoplanetary disc model with both irradiated and viscous heating together with a pebble accretion model to simulate the formation and migration of planets.

    We find that if the disc is heated purely through stellar irradiation, inwards migration of super-Earths is very efficient, resulting in the close-in super-Earth fraction increasing with increasing stellar mass.

    In contrast, when viscous heating is included, planets can undergo outwards migration, delaying migration to the inner edge of the protoplanetary disc, which causes a fraction of super-Earth planets to grow to become giant planets instead.

    This results in a significant reduction of inner super-Earths around high-mass stars and an increase in the number of giant planets, both of which mirror observed features of the planet population around high-mass stars. This effect is most pronounced when the protoplanetary disc is large, since such discs evolve over a longer time-scale. We also test a model when we inject protoplanets at a fixed time early on in the disc lifetime.

    In this case, the fraction of close-in super-Earths decreases with increasing stellar mass in both the irradiated case and viscous case, since longer disc lifetimes around high-mass stars allows for planets to grow into giants instead of super-Earths for most injection locations.

    Jesper Nielsen, Anders Johansen

    Comments: 19 Pages, 16 figures, accepted for publication in A&A
    Subjects: Earth and Planetary Astrophysics (astro-ph.EP)
    Cite as: arXiv:2508.21627 [astro-ph.EP] (or arXiv:2508.21627v1 [astro-ph.EP] for this version)
    https://doi.org/10.48550/arXiv.2508.21627
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    Submission history
    From: Jesper Nielsen
    [v1] Fri, 29 Aug 2025 13:39:28 UTC (3,995 KB)
    https://arxiv.org/abs/2508.21627
    Astrobiology,

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  • The Impact of Enhanced EUV Flux on the Upper Atmosphere of Earth-like Exoplanets

    The Impact of Enhanced EUV Flux on the Upper Atmosphere of Earth-like Exoplanets

    Altitude integrated joule heating for scale factors 1, 5, and 10. Gradient uses the same maximum value for visible demonstration of the changes between the images — astro-ph.EP

    Identifying Earth-like planets outside out solar system is a leading research goal in astronomy, but determining if candidate planets have atmospheres, and more importantly if they can retain atmospheres, is still out of reach.

    In this paper, we present our study on the impact of enhanced EUV flux on the stability and escape of the upper atmosphere of an Earth-like exoplanet using the Global Ionosphere and Thermosphere Model (GITM). We also investigate the differences between one- and three-dimensional solutions.

    We use a baseline case of EUV flux experienced at the Earth, and multiplying this flux by a constant factor going up to 50. Our results show a clear evidence of an inflated and elevated ionosphere due to enhanced EUV flux, and they provide a detailed picture of how different heating and cooling rates, as well as the conductivity are changing at each EUV flux level.

    Our results also demonstrate that one-dimensional solutions are limited in their ability to capture a global atmosphere that are not uniform. We find that a threshold EUV flux level for a stable atmosphere occurs around a factor of 10 times the baseline level, where EUV fluxes above this level indicate a rapidly escaping atmosphere. This threshold EUV flux translates to about 0.3AU for a planet orbiting the Sun.

    Thus, our findings indicate that an Earth-like exoplanet orbiting its host star in a close-in orbit is likely to lose its atmosphere quickly.

    Lukas Hanson, Ofer Cohen, Aaron Ridley, Alex Glocer

    Comments: 13 pages, 9 figures
    Subjects: Earth and Planetary Astrophysics (astro-ph.EP)
    Cite as: arXiv:2508.21745 [astro-ph.EP] (or arXiv:2508.21745v1 [astro-ph.EP] for this version)
    https://doi.org/10.48550/arXiv.2508.21745
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    Related DOI:
    https://doi.org/10.3847/1538-4357/adff7f
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    Submission history
    From: Lukas Hanson
    [v1] Fri, 29 Aug 2025 16:19:14 UTC (2,268 KB)
    https://arxiv.org/abs/2508.21745
    Astrobiology,

    Explorers Club Fellow, ex-NASA Space Station Payload manager/space biologist, Away Teams, Journalist, Lapsed climber, Synaesthete, Na’Vi-Jedi-Freman-Buddhist-mix, ASL, Devon Island and Everest Base Camp veteran, (he/him) 🖖🏻

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  • Shocking find: You can reprogram your immune system with electricity | Health

    Shocking find: You can reprogram your immune system with electricity | Health





















    Shocking find: You can reprogram your immune system with electricity | Health | homenewshere.com

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  • Archaeal G-Quadruplexes: A Novel Model for Understanding Unusual DNA/RNA Structures Across the Tree of Life

    Archaeal G-Quadruplexes: A Novel Model for Understanding Unusual DNA/RNA Structures Across the Tree of Life

    GC content, total number and their frequencies of PQS in H. volcanii
    genome. (A) Schematic presentation of a G-quartet (left) and a G-quadruplex (right).
    (B) Total PQS counts, percentage of GC and PQS frequency characteristics for the
    main chromosome and mini-chromosomes. (C,D) G4 prediction in H. volcanii’s
    promoters: number and localisation relative to the TSS. — biorxiv.org

    Archaea, a domain of microorganisms found in diverse environments including the human microbiome, represent the closest known prokaryotic relatives of eukaryotes.

    This phylogenetic proximity positions them as a relevant model for investigating the evolutionary origins of nucleic acid secondary structures such as G-quadruplexes (G4s), which play regulatory roles in transcription and replication. Although G4s have been extensively studied in eukaryotes, their presence and function in archaea remain poorly characterized.

    In this study, a genome-wide analysis of the halophilic archaeon Haloferax volcanii identified over 5, 800 potential G4-forming sequences. Biophysical validation confirmed that many of these sequences adopt stable G4 conformations in vitro. Using G4-specific detection tools and super-resolution microscopy, G4 structures were visualized in vivo in both DNA and RNA across multiple growth phases.

    Comparable findings were observed in the thermophilic archaeon Thermococcus barophilus. Functional analysis using helicase-deficient H. volcanii strains further identified candidate enzymes involved in G4 resolution. These results establish H. volcanii as a tractable archaeal model for G4 biology.

    Archaeal G-Quadruplexes: A Novel Model for Understanding Unusual DNA/RNA Structures Across the Tree of Life

    Astrobiology, Genomics,

    Explorers Club Fellow, ex-NASA Space Station Payload manager/space biologist, Away Teams, Journalist, Lapsed climber, Synaesthete, Na’Vi-Jedi-Freman-Buddhist-mix, ASL, Devon Island and Everest Base Camp veteran, (he/him) 🖖🏻

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  • Our DNA holds the hidden history of human language

    Our DNA holds the hidden history of human language

    Linguists have long known that when cultures collide, languages rub off on one another. We borrow words, swap sounds, and even reshape grammar. But charting those exchanges across centuries and continents is hard when the written record is patchy or nonexistent.

    A new study flips the problem on its head: instead of starting with history books, the researchers read our DNA to reconstruct past human contact – then asked what happened to the languages.

    DNA traces human language history


    A team led by Anna Graff at the University of Zurich pulled together genetic data from more than 4,700 people in 558 populations. They paired this with two of the world’s largest linguistic databases, which catalogue everything from word order to consonant inventories across thousands of languages.

    Genetic “admixture” – the telltale signature of populations mixing – stands in for a reliable, globally comparable record of contact. With that proxy in hand, the team could identify more than 125 instances where groups clearly met and mingled, even if historians never wrote the encounters down.

    What they saw was unambiguous: when people mix, their languages tend to move closer together. Unrelated languages spoken by populations with genetic contact were four to nine percent more likely to share features than expected.

    That might sound modest, but across entire grammars and sound systems, it’s a strong, consistent nudge toward similarity.

    One surprise was how steady that effect proved to be. Whether the contact was vast and recent – say, colonial movements between continents – or ancient and regional, like Neolithic migrations within Eurasia, the degree of linguistic convergence was strikingly similar.

    “No matter where in the world populations come into contact, their languages become more alike to remarkably consistent extents,” said senior author Chiara Barbieri, now at the University of Cagliari.

    That consistency cuts against a common assumption that only intense, prolonged encounters reshape grammar and sound systems, or that small-scale neighborly contact leaves barely a trace.

    The genetic lens suggests languages are sensitive instruments, registering social touchpoints across the full spectrum – from trade and intermarriage to conquest and diaspora.

    Not all grammar is transferable

    Of course, not every part of a language is equally malleable. Some features seem to travel more readily. Word order patterns and certain consonant sounds were more likely to converge than deeper layers of morphology or prosody.

    But here, too, the study counsels caution. The researchers didn’t find a one-size-fits-all rulebook that says, for example, “Nouns move; verb endings don’t.”

    That challenges decades of “borrowability hierarchies” that rank which features can be shared across languages. Instead, the authors argue, social dynamics – prestige, power, identity, and the practicalities of multilingual life – can override structural inertia.

    If a community prizes a dominant group’s speech, it may adopt conspicuous elements quickly; if it resists assimilation, the most “borrowable” features might barely budge.

    You can see the everyday version of this push and pull in familiar loanwords. English picked up “sausage” from French after the Norman Conquest; centuries later, French borrowed “sandwich” from English.

    Vocabulary swaps like these are the visible tip. Beneath the surface, the new study shows, subtler shifts in sound and syntax can ripple outward whenever people share space and stories.

    The team even found the mirror image of borrowing: divergence on purpose. In some places, features became less alike after contact, not more.

    That happens when communities lean into linguistic differences to mark who they are – tightening vowel systems, restoring older word orders, or reinforcing local pronunciations as a badge of identity. In other words, contact doesn’t always melt boundaries; sometimes it sharpens them.

    This duality – convergence alongside intentional distancing – is central to how languages evolve. It helps explain why some neighboring tongues grow steadily more alike, while others cling to distinctiveness despite centuries of cohabitation.

    DNA tells story of language

    Methodologically, the study’s move is elegant. Historical documents and oral traditions can be rich but patchy, and for many regions and eras they simply don’t exist.

    Genes keep a different kind of ledger. When populations intermix, they leave a durable statistical imprint that persists for thousands of years.

    By aligning those genetic signals with language structures, the authors could quantify contact and its linguistic consequences on a global canvas – from Amazonia and the Sahel to the Pacific and the Arctic.

    The approach also helps disentangle coincidence from contact. Two unrelated languages might independently develop similar features for internal reasons. But when that similarity lines up with clear genetic admixture between the speakers, the balance of probability shifts toward historical interaction.

    Languages evolve in real time

    Beyond satisfying our curiosity about how English, Hausa, Quechua, or Hmong came to be what they are, the findings carry a warning for the present. Contact has always been part of human life, but the pace and scale are accelerating.

    Globalization, urbanization, climate-driven displacement, and land-use change are bringing communities together – and pushing others apart – in new ways. As that churn intensifies, we should expect languages to converge more in some respects and to splinter or vanish in others.

    It also reframes the stakes of language loss. We often focus on shrinking vocabularies and disappearing oral literatures.

    This study suggests that deeper, structural layers – sound patterns, grammatical architectures, the hidden wiring of a language – can erode under sustained contact, even when a language survives on the surface.

    Protecting linguistic diversity, then, isn’t only about counting how many languages remain; it’s about preserving the full range of their internal variety.

    DNA and language share histories

    The research tells a familiar human story with fresh evidence. When people meet – through trade or conquest, migration or marriage – we share more than DNA. We pass around technologies, beliefs, recipes, and ways of speaking.

    Some of those exchanges are voluntary, others are imposed; some knit communities together, others spark efforts to stand apart. Our languages, like our DNA, carry the scars and gifts of those encounters.

    By treating genes as a time machine, this study gives linguistics a new global baseline. It doesn’t replace fieldwork, historical scholarship, or typological theory.

    It makes them sharper, pointing to where contact likely mattered and how deeply. And it leaves us with a clear takeaway for the century ahead: as our lives intertwine ever more tightly, the sounds and structures we use to make meaning will change with them.

    The study is published in the journal Science Advances.

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  • Digging into plant roots with DNA – no shovels required

    Digging into plant roots with DNA – no shovels required

    We stroll past wheat, clover, and grass and see only the green half of the story. The other half – the roots – do the heavy lifting: anchoring plants, pulling up water and nutrients, and locking away carbon in the soil.

    Yet because roots are hidden, scientists have spent decades using muddy, labor-intensive methods to guess their size and spread, often missing the finest, most active threads. According to a team of researchers at Aarhus University, that guesswork can finally stop.

    A high-tech root census


    “It’s a bit like studying marine ecosystems without ever being able to dive,” said senior author Henrik Brinch-Pedersen, a professor in the Department of Agroecology.

    Until now, the standard approach was to carve out big blocks of soil, wash away the dirt, sort and dry what remained, and weigh the roots. It’s slow, destructive, and misses the fine roots that absorb nutrients and release carbon to the soil.

    The new approach swaps spades for droplet digital PCR (ddPCR), a DNA technology that partitions a teaspoon of soil into tens of thousands of microscopic droplets. Each droplet then answers a yes/no question: Does it contain plant DNA with a specific genetic signature?

    The team uses a marker called ITS2 – think of it as a barcode that differs among species – so a single run can reveal not just that roots are present, but whose roots they are. Crucially, it also shows how much underground biomass each species contributes.

    “It’s a bit like giving the soil a DNA test,” Brinch-Pedersen said. “We can suddenly see the hidden distribution of species and biomass without digging up the whole field.”

    Mapping roots with precision

    Because ddPCR counts DNA molecules across thousands of droplets, it can quantify roots that would otherwise be pulverized or rinsed away.

    That makes it possible to map root communities at high resolution in living fields, pastures, and mixed-species grasslands and to repeat measurements over time without disturbing the site.

    The payoff spans several fronts. For climate research, it lets scientists measure how much carbon different crops actually push belowground – data that’s been frustratingly hard to pin down but is essential for credible climate accounting in agriculture.

    For plant breeding, the digital DNA method creates a path to select varieties that invest more in roots without sacrificing grain or forage aboveground.

    And for biodiversity science, the technology finally illuminates the underground dynamics in species mixes – who’s competing, who’s complementing – insights that were “almost impossible before,” Brinch-Pedersen noted.

    Roots matter for the climate

    We tend to picture wind turbines and EVs when we think of climate solutions, but roots are a vast, quiet carbon pump.

    As plants photosynthesize, some of the captured carbon flows belowground into roots and the surrounding soil. Depending on the crop, soil type, and management, a fraction of that carbon can persist for decades or even centuries.

    Farmers and policymakers talk about “soil carbon sequestration,” but without precise measurement tools it’s been hard to document gains in ways that stand up to scrutiny. A rapid, species-resolved root assay changes that equation.

    DNA test in soil

    In practice, researchers collect small soil cores, extract DNA, and run ddPCR with species-specific probes keyed to the ITS2 barcode. The number of positive droplets scales with root biomass for that species in that sample.

    Because the test targets DNA directly in soil, it captures fine roots and root fragments as well as thicker roots that are tough to wash and weigh.

    There are, however, limits. Close relatives can be tricky to tell apart when their barcodes are nearly identical – ryegrass and Italian ryegrass hybrids, for instance, can blur the signal.

    And the method recognizes only what it’s trained to find. Researchers must validate a probe for each species, so expanding the “DNA library” is both the hurdle and the goal.

    “For us, the most important thing is that we have shown it can be done,” Brinch-Pedersen said. “Our vision is to expand the library so we can measure many more species directly in soil samples.”

    Rapid answers from soil

    Speed is the other advantage. Traditional root studies hinge on days to weeks of field and lab work per site. The ddPCR method turns around results in hours, making it practical to scale from a few experimental plots to entire farms, seasons, and regions.

    That opens the door to experiments that were previously unrealistic. Researchers can compare cover crops for their belowground carbon contributions across soil types.

    They can track how drought shifts root allocation among species in a pasture. They can also screen hundreds of breeding lines for deeper, denser root systems.

    Plants that work smarter

    Brinch-Pedersen sees a straight line from measurement to design. If breeders can quantify underground investment as easily as they count kernels or measure protein, they can begin to select for crops that are not only high-yielding but also high-sequestering. These are plants that do more of the climate work for us.

    The same logic applies to mixtures. With species-level root data, agronomists can compose plant communities that pack more carbon belowground while maintaining forage or grain output above.

    The bigger picture is simple: half a plant lives out of sight, and that half shapes soil health, farm resilience, and the climate. With a “DNA test for dirt,” researchers can finally watch that hidden half at work – no shovels required.

    The study is published in the journal Plant Physiology.

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