Category: 7. Science

  • Arctic Ocean Stayed Open to Life During Ice Ages

    Arctic Ocean Stayed Open to Life During Ice Ages

    Led by the European Research Council Synergy Grant project Into the Blue – i2B, the research team studied sediment cores collected from the seafloor of the central Nordic Seas and Yermak Plateau, north of Svalbard. These cores hold tiny chemical fingerprints from algae that lived in the ocean long ago. Some of these algae only grow in open water, while others thrive under seasonal sea ice that forms and melts each year.

    “Our sediment cores show that marine life was active even during the coldest times,” said Jochen Knies , lead author of the study, based at UiT The Arctic University of Norway and co-lead of the Into The Blue – i2B project. “That tells us there must have been light and open water at the surface. You wouldn’t see that if the entire Arctic was locked under a kilometre-thick slab of ice.”

    One of the key indicators the team looked for was a molecule called IP25, which is produced by algae that live in seasonal sea ice. Its regular appearance in the sediments shows that sea ice came and went with the seasons, rather than staying frozen solid all year round.

    Simulating ancient Arctic climates

    To test the findings based on the geological records, the research team used the AWI Earth System Model – a high-resolution computer model – to simulate Arctic conditions during two especially cold periods: the Last Glacial Maximum around 21,000 years ago, and a deeper freeze about 140,000 years ago when large ice sheets covered a lot of the Arctic.

    “The models support what we found in the sediments,” said Knies. “Even during these extreme glaciations, warm Atlantic water still flowed into the Arctic gateway. This helped keep some parts of the ocean from freezing over completely.”

    The models also showed that the ice wasn’t static. Instead, it shifted with the seasons, creating openings in the ice where light could reach the water—and where life could continue to thrive. This research not only reshapes our view of past Arctic climates but also has implications for future climate predictions. Understanding how sea ice and ocean circulation responded to past climate extremes can improve models that project future changes in a warming world.

    “These reconstructions help us understand what’s possible—and what’s not—when it comes to ice cover and ocean dynamics,” said Gerrit Lohmann , co-author of this study, based at Alfred Wegener Institute, Helmholtz Centre for Polar and Marine Research (AWI) and co-lead of Into The Blue – i2B. “That matters when trying to anticipate how ice sheets and sea ice might behave in the future.”

    Re-thinking the giant ice shelf theory

    Some scientists have argued that features on the Arctic seafloor suggest that a huge, grounded ice shelf once covered the entire ocean. But this new study offers another explanation.

    “There may have been short-lived ice shelves in some parts of the Arctic during especially severe cold phases,” said Knies. “But we don’t see any sign of a single, massive ice shelf that covered everything for thousands of years.”

    One possible exception could have occurred about 650,000 years ago, when biological activity in the sediment record dropped sharply. But even then, the evidence points to a temporary event, not a long-lasting frozen lid over the Arctic.

    Understanding the Arctic’s future

    The study sheds new light on how the Arctic has behaved under extreme conditions in the past. This matters because the Arctic is changing rapidly today. Knowing how sea ice and ocean circulation responded to past climate shifts helps scientists understand what might lie ahead.

    “These past patterns help us understand what’s possible in future scenarios,” said Knies. “We need to know how the Arctic behaves under stress—and what tipping points to watch for – as the Arctic responds to a warming world.”

    The full paper, “Seasonal sea ice characterized the glacial Arctic–Atlantic gateway over the past 750,000 years”, is available in Science Advances.

    This research is part of the European Research Council Synergy Grant project Into the Blue – i2B and the Research Council of Norway Centre of Excellence, iC3: Centre for ice, Cryosphere, Carbon, and Climate .

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  • Microscopic hairs drive courage in hermit crabs

    Microscopic hairs drive courage in hermit crabs

    Poke around a British rockpool and you may spot a shell shuffling over the sand. Inside is a hermit crab – an animal that spends much of its life testing the outside world before deciding whether it is safe to venture forth.

    New research from the University of Plymouth reveals that the speed of that decision, a trait biologists call boldness, hinges on a crab’s built-in sensory toolkit.


    The study focuses on microscopic hair-like structures called sensilla that pepper the claws of Pagurus bernhardus, a common UK species.

    By counting those hairs on dozens of individuals and matching the totals to behavior in the lab, the team discovered a clear pattern: more sensilla equals faster recovery from a startle response.

    Hermit crabs so equipped are not only bolder, they are also more predictable – showing similar, rapid emergence times across repeated tests.

    Measuring crab response times

    The experiment began with a simple but telling ritual. Researchers placed each crab in a small tank and gently startled it with a puff of water or a light tap on the shell.

    That cue mimics the sudden pressure wave generated by a predator or rolling wave, prompting the animal to yank its legs and antennae inside its borrowed shell. The team then timed how long it took for eye stalks and claws to reappear.

    About a third of a second is considered lightning fast in hermit-crab terms; several minutes, positively timid. Over repeated trials, certain individuals consistently clocked shorter hideouts, indicating a stable personality trait rather than random chance.

    “I was especially intrigued by how they used their claws and other sensory appendages, such as their antennae, in their explorations and when re-emerging from their shell,” said lead author Ari Drummond, a PhD student at the University of Plymouth.

    That curiosity led to the hunch that claws might act as information-gathering probes, letting crabs “sniff” the water for chemical cues or feel subtle currents that betray lurking threats.

    Claw molts reveal sensors

    Linking behavior to anatomy required patience. Hermit crabs, like all crustaceans, periodically molt. During this process, they shed the outer exoskeleton, including the thin cuticle covering each sensillum.

    Drummond and colleagues waited for each test subject to molt naturally, collected the discarded claw tissue, and examined it under a scanning electron microscope.

    The high-resolution images looked like alien landscapes – ridged terrain studded with evenly spaced bristles. Each bristle is a sensillum, connected to nerve cells that detect touch, water movement, or dissolved chemicals.

    By tracing and counting every sensillum in the images, the team created a detailed sensory map for each crab. This noninvasive method marked a major advance over earlier studies, which often required removing limbs.

    Analysis revealed striking variation: some claws sported 50 percent more sensilla than others of similar size. When the researchers plotted those numbers against startle data, the trend became unmistakable. Bolder hermit crabs have more sensilla on the claw surface.

    Bolder crabs have more hairs

    Why would extra sensory hairs translate into courage? The authors propose that better input reduces uncertainty. With richer information about water chemistry or microcurrents, a crab can judge threats more accurately and resume foraging sooner.

    That efficiency, in turn, may feed back into survival and reproductive success, favoring individuals who “invest” in sensory hardware.

    They call the concept the “sensory investment syndrome.” It’s a hypothesis linking an animal’s personality – here, boldness – to the resources it allocates to senses. If confirmed across other species, it could reshape how biologists think about behavioral diversity in nature.

    “We’ve known for a long time that individual animals of the same species can show consistent behavioral differences from one another,” said senior author Mark Briffa, a professor at Plymouth.

    “Our new research suggests that in hermit crabs, some of this variation may be linked to how individuals sense the world around them.”

    In his opinion, similar mechanisms might operate in insects, fish, or even mammals, where variation in eye size, whisker density, or olfactory receptors could underpin consistent behavioral tendencies.

    Crab survival starts with sensing

    Hermit crabs face mounting challenges: coastal pollution, rising temperatures, and habitat disturbance all alter the sensory landscape of rockpools. Understanding how these creatures sense and decide may reveal which populations are most at risk from environmental change.

    “In a world where environments and species are increasingly at risk from human impacts, it is essential that we gain a better understanding of what information animals detect, how they use that information and then respond to stay alive,” Drummond said.

    Future work will test what each sensillum detects and whether diet, growth, or shell choice affects hair abundance.

    For now, the takeaway is clear: in the miniature dramas playing out between tide and shore, knowledge is power – delivered through a forest of microscopic hairs on a tiny claw.

    The study is published in the journal Proceedings of the Royal Society B.

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  • Rare proteins could switch brain cells on and off

    Rare proteins could switch brain cells on and off

    Researchers have discovered a class of light-sensitive proteins found exclusively in microbes adapted to cold environments, which they believe hold the potential to revolutionize cellular engineering.

    The rare, obscure group of blue proteins known as cryorhodopsins was reportedly unlike anything researchers at the European Molecular Biology Laboratory (EMBL) had seen before.

    Kirill Kovalev, PhD, a structural biologist at EMBL Hamburg’s Schneider Group and EMBL-EBI’s Bateman Group, who had spent years studying rhodopsins – light-sensitive pigments that convert light into electrical signals – believes cryorhodopsins could serve as prototypes for molecular on-off switches in cells.

    “In my work, I search for unusual rhodopsins and try to understand what they do, Kovalev said, adding that he thought he knew rhodopsins inside out before the discovery. “Such molecules could have undiscovered functions that we could benefit from.”

    Completely out of the blue

    Kovalev was discovered by chance while browsing online protein databases. He was stunned when he spotted an unusual feature shared by microbial rhodopsins found only in extremely cold environments, such as glaciers and high mountain regions.

    Reflecting on the fact that rhodopsins are typically found in seas and lakes, he was struck by how these cold-climate variants were almost identical, despite having evolved thousands of miles apart. Considering how crucial they seemed to survive in the cold, he doubted it was a coincidence and named them ‘cryorhodopsins’.

    The image shows the light-detecting protein rhodopsin in five different species, as well as an overlay to reveal how the protein structure has changed with evolution.
    Credit: Qian-Yuan Tang

    Since color is a defining feature of rhodopsins, most of which are pink-orange and activated by green and blue light, Kovalev was eager to examine the newly discovered variants.

    To his surprise, the cryorhodopsins revealed a striking range of colors, including the highly sought-after blue type, which is activated by red light that penetrates tissue more deeply and non-invasively.

    By applying advanced structural biology techniques, Kovalev discovered that the secret to their blue color is the same rare structural feature he originally spotted in the protein databases. “Now that we understand what makes them blue, we can design synthetic blue rhodopsins tailored to different applications.”

    Nature’s built-in UV shield

    The team then tested cryorhodopsins in cultured brain cells and found that exposure to UV light induced electric currents within the cells. When they illuminated the cells with green light, their excitability increased. Meanwhile, exposure to UV or red light reduced their excitability.

    “New optogenetic tools to efficiently switch the cell’s electric activity both ‘on’ and ‘off’ would be incredibly useful in research, biotechnology, and medicine,” Tobias Moser, PhD, a group leader at the University Medical Center Göttingen, said.

    Despite their potential, Kovalev stated that cryorhodopsins aren’t ready to be used as tools. But he emphasized that they’re an excellent prototype. “They have all the key features that, based on our findings, could be engineered to become more effective for optogenetics,” he noted.

    By using advanced spectroscopy, the team then discovered that cryorhodopsins not only detect UV light but also respond more slowly to light than any other known rhodopsins. This suggested they may help microbes sense and respond to harmful UV radiation, a rare trait among related proteins.

    Kovalev also noticed that the cryorhodopsin gene consistently appears alongside a gene for a tiny, unknown protein, hinting at a possible functional link. Using the AI tool AlphaFold, the team predicted that five copies of a small protein form a ring and interact with cryorhodopsin inside the cell.

    They believe that when cryorhodopsin senses UV light, the small protein detaches to relay the signal deeper into the cell. “It was fascinating to uncover a new mechanism via which the light-sensitive signal from cryorhodopsins could be passed on to other parts of the cell.”

    Cracking the code

    To study cryorhodopsins in such detail, the team used a 4D structural biology approach, combining X-ray crystallography, cryo-electron microscopy, and light activation techniques. And since cryorhodopsins are extremely light-sensitive, the researchers had to adapt by handling the samples in near-total darkness to avoid triggering unwanted reactions.

    “We suspect that cryorhodopsins evolved their unique features not because of the cold, but rather to let microbes sense UV light, which can be harmful to them,” Kovalev highlighted.

    He explained that the small proteins consistently spotted near the cryorhodopsin gene are also found in organisms lacking cryorhodopsins, hinting they may have broader roles beyond UV sensing. However, their unique dual function and why they evolved only in cold environments remain a mystery.

    “In cold environments, such as the top of a mountain, bacteria face intense UV radiation,” Kovalev concluded in a press release. He believes cryorhodopsins might help microbes detect UV radiation, allowing them to activate protective responses.

    The study has been published in the journal Science Advances.

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  • Study uncovers the molecular evolutionary strategies of the OxPhos system

    Study uncovers the molecular evolutionary strategies of the OxPhos system

    Mitochondria are the body’s “energy factories,” and their proper function is essential for life. Inside mitochondria, a set of complexes called the oxidative phosphorylation (OxPhos) system acts like a biochemical assembly line, transforming oxygen and nutrients into usable energy.

    Now, the study, led by the GENOXPHOS group at the Spanish National Centre for Cardiovascular Research (CNIC) and the Biomedical Research Networking Centre in the area of Frailty and Healthy Ageing (CIBERFES), and directed by Dr. José Antonio Enríquez, has revealed how this system evolved over millions of years-from the first vertebrates to modern humans. “Understanding this evolution helps explain why some genetic mutations cause rare but serious diseases that affect the OxPhos system,” say José Luis Cabrera the leading author of the study.

    Published in Cell Genomics, the study describes the molecular evolutionary strategies of the OxPhos system, the main site of metabolic and energy integration in the cell. It also shows how this information can be used to identify mutations that cause disease.

    Working in collaboration with Fátima Sánchez-Cabo, head of the CNIC Computational Systems Biomedicine group, the researchers analyzed the interaction between the two types of DNA that encode OxPhos proteins: nuclear DNA (inherited from both parents) and mitochondrial DNA (inherited only from the mother).

    The OxPhos system, explains José Antonio Enríquez-head of the CNIC Functional Genetics of the Oxidative Phosphorylation System (GENOXPHOS) group-comprises five large protein complexes: four that transport electrons and one, called ATP synthase, that produces ATP, the cell’s molecular “fuel.”

    These complexes can work individually or in combination, depending on the cell’s energy needs. Together, they are made up of 103 proteins encoded by two different genomes: nuclear and mitochondrial. While nuclear DNA changes slowly over time and gains variation through genetic mixing during reproduction, mitochondrial DNA evolves much more rapidly but is passed only through the maternal line.”


    Dr. José Antonio Enríquez, GENOXPHOS Lab, CNIC

    Dr. Cabrera adds that the proteins encoded by mitochondrial DNA form the core of the respiratory complexes, “so proper function depends on precise compatibility between the nuclear and mitochondrial components.”

    The study also introduces an innovative new tool: ConScore, a predictive index that assesses the clinical relevance of mutations in the 103 OxPhos proteins. “ConScore is based on the evolutionary divergence of these proteins across vertebrates-including primates and other mammals-and complements human population genetic data,” says Enríquez.

    The authors affirm that ConScore provides a new framework for interpreting potentially pathogenic mutations, opening the door to improved diagnosis and treatment of mitochondrial diseases.

    Ultimately, the researchers conclude, this study not only advances our understanding of how human cells evolved, but also brings us closer to new solutions for patients with rare genetic diseases.

    Source:

    Centro Nacional de Investigaciones Cardiovasculares Carlos III (F.S.P.)

    Journal reference:

    Cabrera-Alarcón, J. L., et al. (2025). Structural diversity and evolutionary constraints of oxidative phosphorylation. Cell Genomics. doi.org/10.1016/j.xgen.2025.100945.

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  • Is RNA Hiding a Secret Code? The Mysterious World of Epitranscriptomics

    Is RNA Hiding a Secret Code? The Mysterious World of Epitranscriptomics

    Introduction – The Unfinished Story of RNA

    In a recent lecture on RNA Biology by Dr. Fazal Adnan, the Head of the Department at Atta Ur Rahman School of Applied Biosciences in Islamabad, presented an intriguing illustration (see Figure 1), that truly ignited curiosity among all of us students. This captivating image not only piqued scientific curiosity but also inspired a deeper conversation about human molecular biology and its evolution. It made me reflect on both the incredible advancements we have made in the past and appreciate the journey of discovery that has brought us to where we are today. 

    It is a widely accepted practice to express gratitude to our ancestors for their contributions in advancing civilization and transforming our way of life. But what if I tell you that our bodies have a similar practice. Just like we honor those who came before us, our cells remember past infections through integrating invader sequences in our genome, helping our cells recognize and combat similar threats in the future. Isn’t that incredible? It’s a fascinating dance of human evolution alongside the evolution of microbes. So, who’s the smarter one in this partnership? Well, this is about the untold story of RNA biology that has revolutionized our understanding of molecular defense. Let’s dive into it. 

    A recent article published in Nature raised a critical question: Why is RNA structure so difficult to predict? While many bioinformatics platforms have successfully tackled protein analysis, they fall short in RNA prediction. This discrepancy highlights a significant challenge in our field, and we must delve into this question, as understanding RNA structure is key to advancing our knowledge in molecular biology and therapeutics.

    For many years, RNA has served as an intermediary component within the framework of the central dogma of molecular biology. Then the discovery of ribozymes, the identification of RNA as a catalyst, and the understanding of the RNA world hypothesis have significantly heightened scholarly interest in the study of RNA. 

    The true importance of RNA began to shine through in 1974, when groundbreaking research unveiled its remarkable ability to self-modify. This unique trait allows RNA to carry out crucial functions that help safeguard the integrity of the cell and its entire cellular system. This process of regulation through inducing chemically modified tags annotates the sequence to functionalize and generate a desired product. The Accumulation of sequences from past generations has aided in the evolution of the genome to increase its fitness. This fascinating interplay reveals just how adaptable and vital RNA is to life itself.

    This has led to the emergence of Epitrancriptomics, which encompasses post-transcriptional modifications that do not affect the base sequence. These modifications have significant implications for the final structure, stability, and translation efficiency of RNA molecules. These chemical modifications control gene expression beyond the DNA sequence. 

    Cracking The RNA Code: What Is Epitranscriptomics?

    The genetic code can be likened to a language that narrates the experiences and resilience of human beings throughout their lives (see Figure 2). This code, composed of the four nucleotides adenine (A), uracil (U), guanine (G), and cytosine (C), conveys essential biological information. Furthermore, RNA modifications function as grammatical rules that enhance and clarify the meanings conveyed by the genetic sequence. To date, over 170 distinct types of RNA modifications have been identified across various forms of RNA, underscoring the intricate nature of genetic regulation. These modifications are not just static; they’re dynamic and reversible, tightly orchestrated by specialized enzymes. You can think of them as the storytellers in this biological tale: where writers(METTL3, METTL14) introduce transformative edits, erasers (FTO, ALKBH5) refine them, and “readers” (YTHDF1, YTHDF2, IGF2BP1) interpret their significance. Embracing this complexity opens up a deeper understanding of the full spectrum of genetic expression.

    Epitranscriptomics is an intriguing RNA editing mechanism that sets itself apart from epigenetics. While epigenetics focuses on how chemical modifications influence gene expression, epitranscriptomics delves into the realm of RNA itself. It’s a fascinating layer of gene regulation that actively transforms the RNA message, shaping its destiny in unique ways. Imagine the power of writing directly on RNA, altering its fate and function; this is the dynamic world of epitranscriptomics!

    Many different chemical changes can happen to RNA, but N6-methyladenosine stands out as a very important molecular switch. This modification plays a critical role, allowing the cell to adapt to its dynamic needs. 

    On the other hand, alterations like acetylation and pseudouridylation improve RNA’s regulatory capabilities even more. They increase the stability of the molecule, enhance its ability to fold, and maintain the integrity of its intricate two- and three-dimensional structures. Because of its crucial function in post-transcriptional control, this vast panorama of alterations highlights the immense complexity and distinctiveness of RNA. A relevant question is raised: might these RNA alterations play a significant role in clarifying the mechanisms behind aging, disease, and evolutionary processes? A pertinent inquiry arises: could these RNA modifications serve as key factors in elucidating the mechanisms underlying disease, aging, and evolutionary processes?

    The Groundbreaking Discoveries That Changed RNA Biology

    The epitranscriptomics and its application in research and development have opened new avenues and have answered some of the important questions on evolution and the role of molecular agents in it. The most significant application is the development of technology to map all the chemical modifications on the transcriptome, which can tell a lot about human health and disease and the adaptive trails a cell undergoes. For example, if we want to study cancer, we can check for RNA alterations, to seek specific modifications specific to that pathogenesis could help to develop novel targets for drug development and understanding how a cell undergoes dysfunction. 

    One of the most significant and potent examples is the development of the COVID-19 vaccine, where chemical alterations have been made to mRNA coding for the protein of interest, increasing the vaccine efficacy while minimizing the unwanted immune reactions. This is the way that understanding chemical modifications for safety profiles of many potent vaccines and therapeutic drugs accelerates the research advancement and provides a novel platform to tackle critical health concerns.

    The Living and the Dead Li’s Elements

    Historically, the epitranscriptomic encompasses the chemical changes such as methylation, acetylation, and pseudouridinylation, but now it has added some new modes of changes. Xiong et al reported that this region also includes RNA control by retrotransposition, which is assisted by the m6A alteration. These retrotransposons provide prospective targets for RNA modification. 

    A study by Dominissini et al distinguishes between “living” (retrotranspositionally competent) and “dead” (retrotranspositionally incompetent) L1 components where data indicates that m6A enhances the activity of functional “living” L1 sequences while simultaneously serving a significant role for “dead” L1 sequences. These “dead” L1 sequences can influence the host organism by inhibiting genes that typically suppress the transposition of “living” L1s. Moreover, these alterations exhibit non-random characteristics and are preserved, signifying that their involvement in retrotransposition represents a strategic framework designed to promote genomic stability and foster functional diversity. 

    VIP pass to tiny RNA molecules

    Small RNAs, known for their existence in plants and traditional therapeutic practices, face considerable obstacles when they travel through the human digestive system. These small compounds are naturally delicate and have difficulty passing through the membranes, which causes their degradation through the body’s surveillance system, before they can induce their potential effects. Despite facing numerous challenges, the remarkable potential of these biomolecules to transform various aspects is truly promising and should not be overlooked.

    Guo et al performed research on Ban Zhi Liana, a herb in traditional Chinese medicine where the isolated crude extract contains the specifically modified small RNAs. These are natural, particularly the two fascinating types: 2′-O-methylation (2′-O-Me) and N6-methyladenosine (m6A). Furthermore, the investigation has also found an additional modification known as 5-methylcytidine (m5C); however, this particular modification did not demonstrate the same exceptional advantages as the others. These findings offer a promising perspective on the potential of natural compounds to advance health and therapeutic applications.

    The Next Frontier: Can We Hack RNA Modifications for Medicine?

    In the above mentioned context, the field of epitranscriptomics is rapidly evolving, providing great opportunities for revealing previously unknown facts within scientific inquiry. Looking ahead, we may anticipate the development of novel instruments and assays, which will pave the way for further in-depth study in RNA biology, covering topics such as aging and cancer, allowing the detection of changes at the individual cell level. Such breakthroughs will allow us to monitor organ health with great accuracy. The advancement of knowledge and technologies to map all chemical changes in a transcriptome will enable the screening of lethal and healthy tags, and techniques to restore them. Here, CRISPR-based tools are transforming the utilization of chemical tags from diagnostics to therapeutics, allowing researchers to add or remove critical modifications with precision. This advancement is laying the groundwork for next-generation theragnostics, in which physicians may one day be able to address diseases by directly targeting RNA and making diagnostics more sensitive and precise.

    We are just beginning to unlock the mysteries of RNA and its critical role in understanding how our bodies function. In the not-so-distant future, we will gain insights into how our bodies heal, all thanks to the fascinating world of RNA biology. It’s an exciting time to be part of this journey.

    References

    Bhat, S. S., Bielewicz, D., Jarmolowski, A., & Szweykowska-Kulinska, Z. (2018). N6-methyladenosine (m6A): Revisiting the Old with Focus on New, an Arabidopsis thaliana Centered Review. Genes9(12), 596. https://doi.org/10.3390/genes9120596

    Cerneckis, J., Ming, G.-L., Song, H., He, C., & Shi, Y. (2024). The rise of epitranscriptomics: Recent developments and future directions. Trends in Pharmacological Sciences45(1), 24–38. https://www.cell.com/trends/pharmacological-sciences/fulltext/S0165-6147(23)00254-7

    Dominissini, D., Moshitch-Moshkovitz, S., Schwartz, S., Salmon-Divon, M., Ungar, L., Osenberg, S., Cesarkas, K., Jacob-Hirsch, J., Amariglio, N., & Kupiec, M. (2012). Topology of the human and mouse m6A RNA methylomes revealed by m6A-seq. Nature485(7397), 201–206. https://idp.nature.com/authorize/casa?redirect_uri=https://www.nature.com/articles/nature11112&casa_token=998Qh-5Va2cAAAAA:InO38ZnffREIuw_ScTtRKxGpwzFdbabgd0mQRmMDeDoJIkshEt5L39MG4Lc2K_sXGYe8FtxUM293sYqm0g

    Guo, S., Li, Z., Li, X., Liang, Z., Zhao, D., Sun, N., Liu, J., Wang, X., Mei, S., & Qiao, X. (2025). 2′-O-methylation and N6-methyladenosine enhance the oral delivery of small RNAs in mice. Molecular Therapy Nucleic Acids. https://www.cell.com/molecular-therapy-family/nucleic-acids/fulltext/S2162-2531(25)00128-3

    Kwon, D. (2025). RNA function follows form-why is it so hard to predict? Nature639(8056), 1106–1108. https://pubmed.ncbi.nlm.nih.gov/40128371/

    Xiong, F., Wang, R., Lee, J.-H., Li, S., Chen, S.-F., Liao, Z., Hasani, L. A., Nguyen, P. T., Zhu, X., & Krakowiak, J. (2021). RNA m6A modification orchestrates a LINE-1–host interaction that facilitates retrotransposition and contributes to long gene vulnerability. Cell Research31(8), 861–885. https://www.nature.com/articles/s41422-021-00515-8

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  • New interstellar comet will keep a safe distance from Earth, NASA says

    New interstellar comet will keep a safe distance from Earth, NASA says

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  • “Rarest Event Ever” Had A Half-Life 1 Trillion Times Longer Than The Universe – How Did We See It?

    “Rarest Event Ever” Had A Half-Life 1 Trillion Times Longer Than The Universe – How Did We See It?

    In 2019, researchers with the XENON Collaboration saw something unexpected. The device is designed to find evidence of the elusive dark matter, a hypothetical substance that is believed (with good reason) to exist everywhere. Instead, it saw something weird happening to the xenon in the device. One of the atoms decayed. This was a surprise as the half-life for that particular xenon was a half-life of 18 billion trillion years. That’s more than 1 trillion times longer than the current age of the universe.

    This has been described as the rarest event ever recorded, and it is not hyperbole. Still, it is important to understand the meaning and context of a half-life of 18 billion trillion years, and how in the end we can see such an event, even if they are extremely rare. The term “half-life” refers to the amount of time it takes for half of a given quantity of a specific atom to decay into another form.

    When we think of radioactive decay, we tend to think of things happening very fast. There’s a good reason for that. With the advent of the nuclear age, discussions of half-life have all been about unstable elements that disappear in seconds and can trigger explosive chain reactions. In medicine, we use radioactive elements that might decay in hours or days, but their half-lives might be a lot longer than that.

    Take Uranium, for example. Its most common form has a half-life of almost 4.5 billion years. So when the Earth formed, it had twice as much Uranium. Still, you wouldn’t want to be near Uranium for long, because the atoms do decay constantly, albeit slowly. Uranium is not super dangerous naturally, but it is in our uses that can pose a more serious health risk.

    Still, the half-life of xenon-124 is about 4 trillion times longer than that of uranium-238. How did we even measure that? The detector has 2 metric tons of xenon in it, which is almost 10,000 trillion trillion atoms. So if you put enough of these atoms together, you should see a single atom decaying every few minutes.

    Should is the operative word here. Because looking at atoms is not like looking at a handful of red marbles waiting for one to turn blue. It is like looking at an overwhelming number of marbles, where one might get slightly more massive and create a flash of x-rays or throw away an electron. In 177 days of data collection, the team saw around 9 events.

    A problem with a lot of these rare events with an enormous half-life is actually catching them in the act. And without seeing the event, we do not even know if it happens. 

    Take the proton, for example, the tiny, positively charged particle at the heart of every atom. Some theories in physics predict that protons might eventually decay. But so far, in all of our experiments, we’ve never seen it happen. That means if proton decay does occur, it must take an incredibly long time, so long, in fact, that scientists estimate its half-life to be at least 1.67 billion trillion trillion years. 100 billion times longer than Xenon-124.

    It is not easy looking for events that make the lifetime of stars look like seconds.  

    The observations were reported in detail in the journal Nature.

    An earlier version of this story was published in 2019.

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  • Humans Have Been Reshaping Earth with Fire for at Least 50,000 Years

    Humans Have Been Reshaping Earth with Fire for at Least 50,000 Years

    A new study reveals that humans were extensively using fire to modify landscapes as far back as 50,000 years ago. That’s at least 10,000 years earlier than previously believed. Scientists uncovered this clue in a 300,000-year-old sediment core extracted from the East China Sea.

    The core contained fossilized charcoal, microscopic remnants of plant matter burned but not fully consumed. Known as pyrogenic carbon, these particles drifted into the sea via rivers over tens of thousands of years. They serve as an enduring record of fire on land.

    Seems like we were playing with fire much earlier than we thought. Image generated using Sora/ChatGPT

    A Fire Signature That Outpaced Climate

    The research team, led by Dr. Debo Zhao from the Institute of Oceanology at the Chinese Academy of Sciences, found something unexpected. Around 50,000 years ago, levels of pyrogenic carbon suddenly spiked. The timing didn’t line up with known climate patterns. It suggested something new was at play.

    “Our findings challenge the widely held belief that humans only began influencing geological processes in the recent past—during the last Ice Age and the ensuing Holocene,” said Dr. Zhao.

    Instead, the evidence points to humans (modern Homo sapiens) as the likely culprits. This timeline aligns with archaeological records showing a rapid expansion of Homo sapiens across Eurasia, Southeast Asia, and into Australia between 70,000 and 50,000 years ago.

    In each of these regions, fire activity began to rise dramatically. But this wasn’t wildfire season. These were intentional flames.

    A Record of Ice and Fire

    Fire history of Europe, East Asia, Southeast Asia and Papua New Guinea–Australia and age distribution of archaeological sites since the last 300,000 years. Credit: IOCAS

    As the climate cooled during glacial periods, fire became indispensable. It helped early humans cook food, stay warm, fend off predators, and migrate into colder, more challenging landscapes. But it also transformed those landscapes.

    “Humans likely began shaping ecosystems and the global carbon cycle through their use of fire even before the Last Ice Age,” said Dr. Stefanie Kaboth-Bahr, a paleontologist at Freie Universität Berlin and coauthor of the study.

    The fire’s effects were lasting. Burning vegetation releases carbon into the atmosphere. Doing this repeatedly over large areas eventually warms the planet, albeit by a very tiny amount compared to present-day industrial activity.

    The discovery suggests that humans began influencing the Earth’s carbon cycle tens of thousands of years earlier than scientists had assumed. “Even during the Last Glaciation, the use of fire had probably started to reshape ecosystems and carbon fluxes,” added Professor Wan Shiming, another corresponding author.

    The Global Signature of Humanity’s First Flames

    The researchers compared the East Asia findings with data from Europe, Southeast Asia, and Papua New Guinea–Australia. The same pattern emerged in each region: a sudden uptick in fire activity starting roughly 50,000 years ago.

    Crucially, this fire surge appeared even where natural conditions—like rainfall or lightning—wouldn’t account for such increases. Something else had to be driving it. The clearest candidate: humans.

    The study also suggests that this early fire use was systematic enough to leave a lasting mark on Earth’s geological record—what some scientists refer to as the pyroscape, the legacy of fire through time.

    This study underscores how early and profoundly humans began altering the planet. It challenges the idea that the Anthropocene (our proposed new geological epoch) begins with agriculture or the Industrial Revolution. Instead, the spark might have been struck much earlier, with the simple but powerful act of lighting a fire.

    Kaboth-Bahr’s research is part of a larger initiative called The Burning Question, which investigates the role of fire in shaping ecosystems across Eastern Africa. Supported by the German Research Foundation and partners in Ethiopia, the project seeks to understand fire’s ecological, climatic, and cultural significance over the last 600,000 years.

    The findings appeared in the Proceedings of the National Academy of Sciences.

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  • New insights into nature’s most remarkable innovation- the ability to sustain a successful pregnancy

    New insights into nature’s most remarkable innovation- the ability to sustain a successful pregnancy

    An international research team led by scientists from the University of Vienna has uncovered new insights into how specialized cell types and communication networks at the interface between mother and fetus evolved over millions of years. These discoveries shed light on one of nature’s most remarkable innovations – the ability to sustain a successful pregnancy. The findings have just been published in Nature Ecology & Evolution.

    Pregnancy that lasts long enough to support full fetal development is a hallmark evolutionary breakthrough of placental mammals – a group that includes humans. At the center of this is the fetal-maternal interface: the site in the womb where a baby’s placenta meets the mother’s uterus, and where two genetically distinct organisms – mother and fetus – are in intimate contact and constant interaction. This interface has to strike a delicate balance: intimate enough to exchange nutrients and signals, but protected enough to prevent the maternal immune system from rejecting the genetically “foreign” fetus.

    To uncover the origins and mechanisms behind this intricate structure, the team analyzed single-cell transcriptomes – snapshots of active genes in individual cells – from six mammalian species representing key branches of the mammalian evolutionary tree. These included mice and guinea pigs (rodents), macaques and humans (primates), and two more unusual mammals: the tenrec (an early placental mammal) and the opossum (a marsupial that split off from placental mammals before they evolved complex placentas).

    A cellular “atlas of mammal pregnancy”

    By analyzing cells at the fetal-maternal interface, the researchers were able to trace the evolutionary origin and diversification of the key cell types involved. Their focus was on two main players: placenta cells, which originate from the fetus and invade maternal tissue, and uterine stromal cells, which are of maternal origin and respond to this invasion.

    Using molecular biology tools, the team identified distinct genetic signatures – patterns of gene activity unique to specific cell types and their specialized functions. Notably, they discovered a genetic signature associated with the invasive behavior of fetal placenta cells that has been conserved in mammals for over 100 million years. This finding challenges the traditional view that invasive placenta cells are unique to humans, and reveals instead that they are a deeply conserved feature of mammalian evolution. During this time, the maternal cells weren’t static, either. Placental mammals, but not marsupials, were found to have acquired new forms of hormone production, a pivotal step toward prolonged pregnancies and complex gestation, and a sign that the fetus and the mother could be driving each other’s evolution.

    Cellular dialogue: Between cooperation and conflict

    To better understand how the fetal-maternal interface functions, the study tested two influential theories about the evolution of cellular communication between mother and fetus.

    The first, the “Disambiguation Hypothesis,” predicts that over evolutionary time, hormonal signals became clearly assigned to either the fetus or the mother – a possible safeguard to ensure clarity and prevent manipulation. The results confirmed this idea: certain signals, including WNT proteins, immune modulators, and steroid hormones, could be clearly traced back to one source tissue.

    The second, the “Escalation Hypothesis” (or “genomic Conflict”), suggests an evolutionary arms race between maternal and fetal genes – with, for example, the fetus boosting growth signals while the maternal side tries to dampen them. This pattern was observed in a small number of genes, notably IGF2, which regulates growth. On the whole, evidence pointed to fine-tuned cooperative signaling.

    These findings suggest that evolution may have favored more coordination between mother and fetus than previously assumed. The so-called mother-fetus power struggle appears to be limited to specific genetic regions. Rather than asking whether pregnancy as a whole is conflict or cooperation, a more useful question may be: where is the conflict?”


    Daniel J. Stadtmauer, lead author of the study and researcher at the Department of Evolutionary Biology, University of Vienna

    Single-cell analysis: A key to evolutionary discovery

    The team’s discoveries were made possible by combining two powerful tools: single-cell transcriptomics – which captures the activity of genes in individual cells – and evolutionary modeling techniques that help scientists reconstruct how traits might have looked in long-extinct ancestors. By applying these methods to cell types and their gene activity, the researchers could simulate how cells communicate in different species, and even glimpse how this dialogue has evolved over millions of years.

    “Our approach opens a new window into the evolution of complex biological systems – from individual cells to entire tissues,” says Silvia Basanta, co–first author and researcher at the University of Vienna. The study not only sheds light on how pregnancy evolved, but also offers a new framework for tracking evolutionary innovations at the cellular level – insights that could one day improve how we understand, diagnose, or treat pregnancy-related complications.

    The research was conducted in the labs of Mihaela Pavličev at the Department of Evolutionary Biology, University of Vienna, and Günter Wagner at Yale University. Wagner is Professor Emeritus at Yale and a Senior Research Fellow at the University of Vienna. The study was supported by the John Templeton Foundation and the Austrian Science Fund (FWF).

    Source:

    Journal reference:

    Stadtmauer, D. J., et al. (2025). Cell type and cell signalling innovations underlying mammalian pregnancy. Nature Ecology & Evolution. doi.org/10.1038/s41559-025-02748-x.

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  • 10 fun tours and adventures for the ultimate total solar eclipse 2026 experience

    10 fun tours and adventures for the ultimate total solar eclipse 2026 experience

    There is no better excuse to travel than to see a total solar eclipse, and the next one happens on Aug. 12, 2026. Although a total solar eclipse is an unforgettable experience, totality lasts only a few minutes. So what do you do before and after the eclipse?

    Boredom won’t be a problem for the 2026 total solar eclipse, with some truly spectacular locations and popular vacation areas in or close to the path of totality. From Greenland to Spain, there are myriad unique experiences and off-the-beaten-track itineraries that offer much more than nature’s greatest spectacle.

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