Nelson AN, Ploss A. Emerging mosquito-borne flaviviruses. mBio. 2024;15:e0294624. https://doi.org/10.1128/mbio.02946-24.
Google Scholar
Campbell GL, Hills SL, Fischer M, Jacobson JA, Hoke CH, Hombach JM, Marfin AA, Solomon T, Tsai TF, Tsu VD, Ginsburg AS. Estimated global incidence of Japanese encephalitis: a systematic review. Bull World Health Organ. 2011;89:766–774, 774A-774E. https://doi.org/10.2471/BLT.10.085233.
Bhatt S, Gething PW, Brady OJ, Messina JP, Farlow AW, Moyes CL, et al. The global distribution and burden of dengue. Nature. 2013;496:504–7. https://doi.org/10.1038/nature12060.
Google Scholar
Müller JA, Harms M, Krüger F, Groß R, Joas S, Hayn M, et al. Semen inhibits Zika virus infection of cells and tissues from the anogenital region. Nat Commun. 2018;9:2207. https://doi.org/10.1038/s41467-018-04442-y.
Google Scholar
Zhang J, Shu Y, Shan X, Li DY, Ma DH, Li TT, et al. Co-circulation of three dengue virus serotypes led to a severe dengue outbreak in Xishuangbanna, a border area of China, Myanmar, and Laos, in 2019. Int J Infect Dis. 2021;107:15–7. https://doi.org/10.1016/j.ijid.2021.04.010.
Google Scholar
Huang ZW, Zhang YX, Li HY, Zhu JJ, Song WC, Chen KD, et al. Vaccine development for mosquito-borne viral diseases. Front Immunol. 2023;14:1161149. https://doi.org/10.3389/fimmu.2023.1161149.
Google Scholar
Torres TZB, Prince BC, Robison A, Rückert C. Optimized in vitro CRISPR/Cas9 gene editing tool in the West Nile Virus mosquito vector, Culex quinquefasciatus. Insects. 2022;13:856. https://doi.org/10.3390/insects13090856.
Google Scholar
Paupy C, Delatte H, Bagny L, Corbel V, Fontenille D. Aedes albopictus, an arbovirus vector: from the darkness to the light. Microbes Infect. 2009;11:1177–85. https://doi.org/10.1016/j.micinf.2009.05.005.
Google Scholar
Maia LMS, Bezerra MCF, Costa MCS, Souza EM, Oliveira MEB, Ribeiro ALM, et al. Natural vertical infection by dengue virus serotype 4, Zika virus and Mayaro virus in Aedes (Stegomyia) aegypti and Aedes (Stegomyia) albopictus. Med Vet Entomol. 2019;33:437–42. https://doi.org/10.1111/mve.12369.
Google Scholar
Bellini R, Puggioli A, Balestrino F, Brunelli P, Medici A, Urbanelli S, et al. Sugar administration to newly emerged Aedes albopictus males increases their survival probability and mating performance. Acta Trop. 2014;132:S116–23. https://doi.org/10.1016/j.actatropica.2013.11.022.
Google Scholar
He W, Chen Y, Zhang X, Peng M, Xu D, He H, et al. Virome in adult Aedes albopictus captured during different seasons in Guangzhou City, China. Parasit Vectors. 2021;14:415. https://doi.org/10.1186/s13071-021-04922-z.
Google Scholar
Lodder WJ, Wuite M, de Roda Husman AM, Rutjes SA. Environmental surveillance of human parechoviruses in sewage in The Netherlands. Appl Environ Microbiol. 2013;79:6423–8. https://doi.org/10.1128/aem.01917-13.
Google Scholar
Luo L, Jiang LY, Xiao XC, Di B, Jing QL, Wang SY, et al. The dengue preface to endemic in mainland China: the historical largest outbreak by Aedes albopictus in Guangzhou, 2014. Infect Dis Poverty. 2017;6:148. https://doi.org/10.1186/s40249-017-0352-9.
Google Scholar
Lai S, Huang Z, Zhou H, Anders KL, Perkins TA, Yin W, et al. The changing epidemiology of dengue in China, 1990–2014: a descriptive analysis of 25 years of nationwide surveillance data. BMC Med. 2015;13:100. https://doi.org/10.1186/s12916-015-0336-1.
Google Scholar
Wu D, Zhang Y, Zhouhui Q, Kou J, Liang W, Zhang H, et al. Chikungunya virus with E1–A226V mutation causing two outbreaks in 2010, Guangdong. China Virol J. 2013;10:174. https://doi.org/10.1186/1743-422X-10-174.
Google Scholar
Zhang Y, Chen W, Wong G, Bi Y, Yan J, Sun Y, et al. Highly diversified Zika viruses imported to China, 2016. Protein Cell. 2016;7:461–4. https://doi.org/10.1007/s13238-016-0274-5.
Google Scholar
Song Y, Kaster AK, Vollmers J, Song Y, Davison PA, Frentrup M, et al. Single-cell genomics based on Raman sorting reveals novel carotenoid-containing bacteria in the Red Sea. Microb Biotechnol. 2017;10:125–37. https://doi.org/10.1111/1751-7915.12420.
Google Scholar
Mitchell A, Bucchini F, Cochrane G, Denise H, ten Hoopen P, Fraser M, et al. EBI metagenomics in 2016–An expanding and evolving resource for the analysis and archiving of metagenomic data. Nucleic Acids Res. 2016;44:D595-603. https://doi.org/10.1093/nar/gkv1195.
Google Scholar
Shi M, Lin XD, Chen X, Tian JH, Chen LJ, Li K, et al. The evolutionary history of vertebrate RNA viruses. Nature. 2018;556:197–202. https://doi.org/10.1038/s41586-018-0012-7.
Google Scholar
Gregory AC, Zayed AA, Conceição-Neto N, Temperton B, Bolduc B, Alberti A, Ardyna M, Arkhipova K, Carmichael M, Cruaud C, Dimier C, Domínguez-Huerta G, Ferland J, Kandels S, Liu Y, Marec C, Pesant S, Picheral M, Pisarev S, Poulain J, Tremblay JÉ, Vik D; Tara Oceans Coordinators; Babin M, Bowler C, Culley AI, de Vargas C, Dutilh BE, Iudicone D, Karp-Boss L, Roux S, Sunagawa S, Wincker P, Sullivan MB. Marine DNA Viral Macro- and Microdiversity from Pole to Pole. Cell. 2019;177(5):1109–1123.e14. https://doi.org/10.1016/j.cell.2019.03.040.
Cholleti H, Hayer J, Abilio AP, Mulandane FC, Verner-Carlsson J, Falk KI, et al. Discovery of novel viruses in mosquitoes from the Zambezi valley of Mozambique. PLoS ONE. 2016;11:e0162751. https://doi.org/10.1371/journal.pone.0162751.
Google Scholar
Li CX, Shi M, Tian JH, Lin XD, Kang YJ, Chen LJ, et al. Unprecedented genomic diversity of RNA viruses in arthropods reveals the ancestry of negative-sense RNA viruses. Elife. 2015;4:e05378. https://doi.org/10.7554/eLife.05378.
Google Scholar
de Carvalho MS, de Lara Pinto AZ, Pinheiro A, Rodrigues JSV, Melo FL, da Silva LA, et al. Viola phlebovirus is a novel Phlebotomus fever serogroup member identified in Lutzomyia (Lutzomyia) longipalpis from Brazilian Pantanal. Parasit Vectors. 2018;11:405. https://doi.org/10.1186/s13071-018-2985-3.
Google Scholar
Atoni E, Wang Y, Karungu S, Waruhiu C, Zohaib A, Obanda V, et al. Metagenomic virome analysis of Culex mosquitoes from Kenya and China. Viruses. 2018;10:30. https://doi.org/10.3390/v10010030.
Google Scholar
Aranda C, Martínez MJ, Montalvo T, Eritja R, Navero-Castillejos J, Herreros E, et al. Arbovirus surveillance: first dengue virus detection in local Aedes albopictusmosquitoes in Europe, Catalonia, Spain, 2015. Euro Surveill. 2018;23:1700837. https://doi.org/10.2807/1560-7917.ES.2018.23.47.1700837.
Google Scholar
da Costa CF, da Silva AV, do Nascimento VA, de Souza VC, Monteiro DCDS, Terrazas WCM, Dos Passos RA, Nascimento S, Lima JBP, Naveca FG. Evidence of vertical transmission of Zika virus in field-collected eggs of Aedes aegypti in the Brazilian Amazon. PLoS Negl Trop Dis. 2018;12:e0006594. https://doi.org/10.1371/journal.pntd.0006594.
Akıner MM, Öztürk M, Başer AB, Günay F, Hacıoğlu S, Brinkmann A, et al. Arboviral screening of invasive Aedes species in northeastern Turkey: West Nile virus circulation and detection of insect-only viruses. PLoS Negl Trop Dis. 2019;13:e0007334. https://doi.org/10.1371/journal.pntd.0007334.
Google Scholar
IDseq Help Center. https://help.idseq.net. Accessed April 2020.
Langmead B, Salzberg SL. Fast gapped-read alignment with Bowtie 2. Nat Methods. 2012;9:357–9. https://doi.org/10.1038/nmeth.1923.
Google Scholar
Bohl JA, Lay S, Chea S, Ahyong V, Parker DM, Gallagher S, et al. Discovering disease-causing pathogens in resource-scarce Southeast Asia using a global metagenomic pathogen monitoring system. Proc Natl Acad Sci U S A. 2022;119:e2115285119. https://doi.org/10.1073/pnas.2115285119.
Google Scholar
Kalantar KL, Carvalho T, de Bourcy CFA, Dimitrov B, Dingle G, Egger R, et al. IDseq-An open source cloud-based pipeline and analysis service for metagenomic pathogen detection and monitoring. Gigascience. 2020;9:giaa111. https://doi.org/10.1093/gigascience/giaa111.
Google Scholar
Tang L, Peng S, Bi Y, Shan P, Hu X. A new method combining LDA and PLS for dimension reduction. PLoS ONE. 2014;9:e96944. https://doi.org/10.1371/journal.pone.0096944.
Google Scholar
Xiao P, Li C, Zhang Y, Han J, Guo X, Xie L, et al. Metagenomic sequencing from mosquitoes in China reveals a variety of insect and human viruses. Front Cell Infect Microbiol. 2018;8:364. https://doi.org/10.3389/fcimb.2018.00364.
Google Scholar
Shan W, Yuan H, Chen H, Dong H, Zhou Q, Tao F, et al. Genetic structure of Aedes albopictus (Diptera: Culicidae) populations in China and relationship with the knockdown resistance mutations. Infect Dis Poverty. 2023;12:46. https://doi.org/10.1186/s40249-023-01096-x.
Google Scholar
Lv RC, Zhu C-, Wang CH, Ai LL, Lv H, Zhang B, Li CM, An J, Wang PG, Hu D, Tan XZ, Yang L, Zhou HN, Tan WL. Genetic diversity and population structure of Aedes aegypti after massive vector control for dengue fever prevention in Yunnan border areas. Sci Rep. 2020;10: 12731. https://doi.org/10.1038/s41598-020-69668-7.
Shi C, Zhao L, Atoni E, Zeng W, Hu X, Matthijnssens J, Yuan Z, Xia H. Stability of the Virome in lab- and field-collected Aedes albopictus mosquitoes across different developmental stages and possible core viruses in the publicly available virome data of Aedes mosquitoes. mSystems. 2020;5:e00640–20. https://doi.org/10.1128/mSystems.00640-20.
Wang X, Ding Y, Lu X, Geng D, Li S, Raikhel AS, et al. The ecdysone-induced protein 93 is a key factor regulating gonadotrophic cycles in the adult female mosquito Aedes aegypti. Proc Natl Acad Sci USA. 2021;118:e2021910118. https://doi.org/10.1073/pnas.2021910118.
Google Scholar
Frankel-Bricker J. Shifts in the microbiota associated with male mosquitoes (Aedes aegypti) exposed to an obligate gut fungal symbiont (Zancudomyces culisetae). Sci Rep. 2020;10:12886. https://doi.org/10.1038/s41598-020-69828-9.
Google Scholar
Das B, Satapathy T, Kar SK, Hazra RK. Genetic structure and Wolbachia genotyping in naturally occurring populations of Aedes albopictus across contiguous landscapes of Orissa, India. PLoS ONE. 2014;9:e94094. https://doi.org/10.1371/journal.pone.0094094.
Google Scholar
Vega-Rua A, Zouache K, Caro V, Diancourt L, Delaunay P, Grandadam M, et al. High efficiency of temperate Aedes albopictus to transmit chikungunya and dengue viruses in the Southeast of France. PLoS ONE. 2013;8:e59716. https://doi.org/10.1371/journal.pone.0059716.
Google Scholar
Melo T, Sousa CA, Delacour-Estrella S, Bravo-Barriga D, Seixas G. Characterization of the microbiome of Aedes albopictus populations in different habitats from Spain and São Tomé. Sci Rep. 2024;14:20545. https://doi.org/10.1038/s41598-024-71507-y.
Google Scholar
Pan YF, Zhao H, Gou QY, Shi PB, Tian JH, Feng Y, et al. Metagenomic analysis of individual mosquito viromes reveals the geographical patterns and drivers of viral diversity. Nat Ecol Evol. 2024;8:947–59. https://doi.org/10.1038/s41559-024-02365-0.
Google Scholar
Yang X, Qin S, Liu X, Zhang N, Chen J, Jin M, et al. Meta-viromic sequencing reveals virome characteristics of mosquitoes and Culicoides on Zhoushan Island, China. Microbiol Spectr. 2023;11:e0268822. https://doi.org/10.1128/spectrum.02688-22.
Google Scholar
de Faria IJS, de Almeida JPP, Marques JT. Impact of symbiotic insect-specific viruses on mosquito vector competence for arboviruses. Curr Opin Insect Sci. 2024;63:101194. https://doi.org/10.1016/j.cois.2024.101194.
Google Scholar
Xu Y, Xu J, Liu T, Liu P, Chen XG. Metagenomic analysis reveals the virome profiles of Aedes albopictus in Guangzhou, China. Front Cell Infect Microbiol. 2023;13:1133120. https://doi.org/10.3389/fcimb.2023.1133120.
Google Scholar
Xiao P, Han J, Zhang Y, Li C, Guo X, Wen S, et al. Metagenomic analysis of Flaviviridae in mosquito viromes isolated from Yunnan province in China reveals genes from dengue and zika viruses. Front Cell Infect Microbiol. 2018;8:359. https://doi.org/10.3389/fcimb.2018.00359.
Google Scholar
Lv RC, Zhu CQ, Wang CH, Ai LL, Lv H, Zhang B, et al. Genetic diversity and population structure of Aedes aegypti after massive vector control for dengue fever prevention in Yunnan border areas. Sci Rep. 2020;10:12731. https://doi.org/10.1038/s41598-020-69668-7.
Google Scholar