Category: 8. Health

  • MHRA to investigate links between genetics, GLP-1 drugs and pancreatitis : Clyde & Co

    MHRA to investigate links between genetics, GLP-1 drugs and pancreatitis : Clyde & Co

    The Medicines and Healthcare products Regulatory Agency (MHRA) has launched an investigation into whether an individual’s genes may increase their risk of developing acute pancreatitis when taking GLP-1 drugs for weight loss and Type 2 diabetes.

    The investigation follows reports submitted to the MHRA’s Yellow Card scheme purportedly linking GLP-1 drugs to numerous deaths, and adverse reactions, the bulk of which were comprised of gastrointestinal disorders. The reports break down as follows:

    • Semaglutides (with brand names including Ozempic and Wegovy): 18,046 adverse reactions, 1,765 serious reports and 16 fatal outcomes.
    • Tirzepatides (with brand names including Mounjaro): 20,882 adverse reactions, 3,116 serious reports and 21 fatal outcomes.
    • Liraglutide (with brand names including Saxenda and Victoza): 2,905 adverse reactions, 688 serious reports and 18 fatal outcomes.

    Extracted from Yellow Card website, 27 June 2025 – What is being reported | Making medicines and medical devices safer

    Whilst it should be stressed that these reports are unverified, reflecting suspected or potential links between GLP-1 drugs and adverse outcomes, the reports raise necessary questions in the context of the risk/benefit of GLP-1 drugs and broader risk landscape, which includes:

    • A huge increase in the use of GLP-1 drugs, with estimates suggesting that 1.5M people in the UK may be taking privately funded weight loss injections, with a further 220,000 expected to receive Mounjaro, after it recently became available via the NHS.
    • The suggestion of a causative relationship between GLP-1 drugs and pancreatitis, including:

      • A research paper published in the BMJ linking GLP-1 drugs to an increased risk of gastrointestinal events, including pancreatitis, gastroparesis, and bowel obstruction.
      • The US Food and Drug Administration’s Adverse Events Reporting System (FAERS) receiving 908 reports of Ozempic users developing pancreatitis.

    • The developing litigation in the US, which is centred around a large multi-district litigation against Eli Lilly (the manufacturer of Trulicity and Mounjaro) and Novo Nordisk (the manufacturer of Ozempic, Wegovy, and Rybelsus) in relation to alleged personal injuries. Whilst the alleged injuries include pancreas damage, the litigation is more strongly focused on other injuries, chiefly, gastroparesis, bowel blockage and vision problems. The claims comprise various causes of action, including failure to warn, negligence, misrepresentation and breaches of consumer protection legislation/unfair trade practices.
    • The extent to which, if at all, the MHRA’s investigation might impact clinical trials, including an ongoing NHS trial, which seeks to measure the “real-world” public health impact of weight loss drugs, including their impacts on prospects of employment and number of sick days taken. The trial involves around 3,000 people in the Greater Manchester area, and is set to take place over a 5 year period.

    Pending further clarification of the role (if any) that an individual’s genetics may play in the development of pancreatitis, there would be no obvious need for any or any immediate change in underwriters’ approach to GLP-1 drugs. The Market will, no doubt, be monitoring the position with interest.

    Further detail on the MHRA’s investigation is available here: If you take a GLP-1 medicine and have been hospitalised by acute pancreatitis, the Yellow Card Biobank wants to hear from you  – GOV.UK

    View all our ‘weight loss drugs’ content here

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  • 3D-Printed Smart Pen Helps Diagnose Parkinson’s

    3D-Printed Smart Pen Helps Diagnose Parkinson’s


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    Every year, tens of thousands of people with signs of Parkinson’s disease go unnoticed until the incurable neurodegenerative condition has already progressed.

    Motor symptoms, such as tremors or rigidity, often emerge only after significant neurological damage has occurred. By the time patients are diagnosed, more than half of their dopamine-producing neurons may already be lost. This kind of diagnostic delay can limit treatment options and slow progress on early-stage interventions. While there are existing tests to detect biomarkers of Parkinson’s, including cell loss in the brain and inflammatory markers in blood, they typically require access to specialists and costly equipment at major medical centers, which may be out of reach for many.

    Led by Jun Chen, an associate professor of bioengineering at the UCLA Samueli School of Engineering, researchers have developed a seemingly simple yet effective tool: a smart, self-powered magnetoelastic pen that could help detect early signs of Parkinson’s by analyzing a person’s handwriting.

    The highly sensitive diagnostic pen, described in a UCLA-led study and published as a cover story in the June issue of Natural Chemical Engineering, features a soft, silicon magnetoelastic tip and ferrofluid ink — a special liquid containing tiny magnetic particles. When the pen’s tip is pressed against a surface or moved in the air, the pen converts both on-surface and in-air writing motions into high-fidelity, quantifiable signals through a coil of conductive yarn wrapped around the pen’s barrel. Although not intended for writing, the pen is self-powered leveraging changes in the magnetic properties of its tip and the dynamic flow of the ferrofluid ink to generate data.

    To test the pen’s diagnostic potential, the team conducted a pilot study with 16 participants, three of whom had Parkinson’s disease. The pen recorded detailed handwriting signals, which were then analyzed by a neural network trained to detect motor patterns associated with the disease. The model was able to distinguish participants with Parkinson’s from healthy individuals with an average accuracy of 96.22%.

    “Detection of subtle motor symptoms unnoticeable to the naked eye is critical for early intervention in Parkinson’s disease,” said Chen, who is the study’s corresponding author. “Our diagnostic pen presents an affordable, reliable and accessible tool that is sensitive enough to pick up subtle movements and can be used across large populations and in resource-limited areas.”

    The researchers anticipate that this pen could transform early detection of Parkinson’s and other neurodegenerative conditions. Rather than waiting for symptoms to become disruptive, primary care physicians or geriatric specialists could administer a quick handwriting test during routine visits and use the data to inform earlier referrals or treatment.

    Reference: Chen G, Tat T, Zhou Y, et al. Neural network-assisted personalized handwriting analysis for Parkinson’s disease diagnostics. Nat Chem Eng. 2025;2(6):358-368. doi: 10.1038/s44286-025-00219-5

    This article has been republished from the following materials. Note: material may have been edited for length and content. For further information, please contact the cited source. Our press release publishing policy can be accessed here.

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  • Mental health treatment and its impact on survival outcomes in patients with comorbid mental health and cardiovascular diseases: a retrospective cohort study | BMC Psychiatry

    Mental health treatment and its impact on survival outcomes in patients with comorbid mental health and cardiovascular diseases: a retrospective cohort study | BMC Psychiatry

    Study setting

    This study was conducted at four major healthcare facilities in Northwest Ethiopia including Debre Markos Comprehensive Specialized Hospital, Tibebe Gihon Comprehensive Specialized Hospital, University of Gondar Comprehensive Specialized Hospital, and Felege Hiwot Comprehensive Specialized Hospital.

    Study period and design

    The study was conducted, from January 1, 2023, to May 31, 2023. A retrospective cohort design was employed to assess existing medical records, using a one year dataset.

    Source and study population

    The study population consisted of patients diagnosed with comorbid mental health and cardiovascular diseases who received care at the participating hospitals. Patients were identified through hospital admission and discharge records, outpatient clinic logs, and electronic health records.

    Eligibility criteria

    The inclusion criteria for participants were:

    • A confirmed diagnosis of comorbid mental health and cardiovascular disease in medical records.

    • Age 18 years or older at the time of diagnosis.

    • Available medical records for the duration of the study period.

    The exclusion criteria for participants were:

    • Patients with incomplete medical records,

    • Those who had prior cardiovascular surgeries.

    • Individuals with terminal illnesses unrelated to comorbid mental health and cardiovascular diseases.

    Study variables

    The dependent variables are hospital readmission and emergency department visits. The independent variables included mental health treatment, age, sex, and residence.

    Sample size determination

    This study included all patients who met the eligibility criteria during the study period. As the study design was based on medical record review, no a priori sample size or power calculation was performed. Instead, the full population of eligible patients included to maximize statistical power and ensure generalizability.

    A total of 319 patients with comorbid mental health and cardiovascular diseases between January 2018 and December 2022 were identified from four healthcare institutions in Northwest Ethiopia. These institutions were selected in simple random approaching method.

    Sampling technique

    To ensure the sample was representative of the eligible population across the participating hospitals, a proportional simple random sampling technique was employed. The total number of eligible patients at each hospital during the study period was first identified through a manual review of patient records. Proportional allocation was then used to determine the number of patients to include from each hospital based on its share of the total eligible patient population.

    The formula used for proportional allocation was: ni = (Ni / N) × n.

    Where:

    • ni = sample size from hospital i.

    • Ni = number of eligible patients in hospital i.

    • N = total number of eligible patients across all hospitals.

    • n = total sample size (319).

    Based on estimated eligible patient numbers from hospital records (N = 1,100), the sample was allocated as follows:

    • Debre Markos Comprehensive Specialized Hospital: n1 = (360 / 1100) × 319 ≈ 104 patients.

    • University of Gondar Comprehensive Specialized Hospital: n2 = (300 / 1100) × 319 ≈ 87 patients.

    • Felege Hiwot Comprehensive Specialized Hospital: n3 = (240 / 1100) × 319 ≈ 70 patients.

    • Tibebe Gihon Comprehensive Specialized Hospital: n4 = (200 / 1100) × 319 ≈ 58 patients.

    After determining the number of participants per hospital, simple random sampling was applied within each hospital. Eligible patient lists were prepared, and random numbers were generated using a computer-based random number generator to select participants independently.

    Data collection procedure

    This study employed a structured questionnaire, developed after an extensive review of relevant literature. The data collection instrument designed to capture sociodemographic characteristics, clinical parameters, and medication-related variables, with all data extracted from patient medical records. Comorbid conditions including diabetes mellitus, hyperlipidemia, hypertension, and other chronic physical conditions were identified based on clinician-documented diagnoses in the medical charts. Comorbidity was considered present if it was recorded in the patient’s medical history, diagnostic summary, or treatment plan during admission or follow-up visits. These conditions were categorized as binary variables (present or absent), and no additional thresholds related to disease severity, duration, or laboratory values were applied due to variability in documentation across sites.

    Multiple methodologies were employed to assess the receipt of mental health treatment. Pharmacy refill records were used to determine whether patients actively received prescribed mental health medications during the study period. The duration of these prescriptions was also assessed as a measure of adherence to treatment regimens. Patient charts were systematically examined for indications of mental health treatment, including therapist notes, treatment plans, and mental health evaluations. Specific diagnosis codes associated with mental health conditions were identified to establish a clear connection between diagnosis and treatment. In addition to assessing the receipt of treatment, clinical outcomes related to mental health treatment were analyzed. Indicators such as psychiatric symptoms, changes in diagnoses, and hospitalization rates for mental health crises were assessed. To examine emergency department visits, patient medical records were reviewed throughout the study period. Details such as the reason for each visit, clinical diagnoses, and related mental health assessments were recorded. Visits were categorized based on their connection to comorbid mental health and cardiovascular diseases, mental health crises, or other health complications. For hospital readmissions, a similar review of patient medical records was conducted to track subsequent admissions within a specified follow-up period after discharge. Diagnosis dates were extracted from electronic health records, inpatient and outpatient medical charts, and physician notes. Diagnosis dates were extracted from electronic health records, inpatient and outpatient medical charts, and physician notes. For psychiatric disorders, clinical evaluations, mental health treatment initiation records, and International Classification of Diseases (ICD-10) codes were reviewed, with specific codes. For cardiovascular conditions, diagnostic imaging reports, laboratory results, and physician-confirmed diagnoses, along with corresponding ICD-10 codes, were examined. When exact diagnosis dates were unavailable, the earliest documented evidence of the condition, based on clinical evaluations or treatment initiation was recorded. Given the study’s focus on comorbid mental health and cardiovascular diseases, special attention was given to cases where the timing of psychiatric and cardiovascular diagnoses differed. For patients with pre-existing psychiatric disorders, the timing of the CVD diagnosis was recorded as the key event indicating the onset of a comorbid mental health and cardiovascular diseases. Conversely, for patients with pre-existing CVD, the timing of the psychiatric disorder diagnosis was recorded as the key event. In instances where both conditions were diagnosed simultaneously (e.g., during a single hospital admission), this date was recorded as the timing for both conditions. For patients with multiple episodes of the same condition, such as recurrent depressive episodes or repeated cardiovascular events, the first documented diagnosis within the study period was used.

    Operational definitions

    • Comorbid mental health and cardiovascular diseases are health conditions that involve both cardiovascular disorders and psychiatric disorders.

    • Mental health treatment refers to interventions aimed at alleviating symptoms and improving the well-being of patients with diagnosed mental health conditions.

    • Hospital readmission is defined as any unplanned admission to the hospital. In this study, readmissions included those which are related to comorbid mental health and cardiovascular diseases.

    • Emergency department visit is any encounter in the emergency department requiring immediate medical attention. In this study, emergency department visits included those related to comorbid mental health and cardiovascular diseases.

    • Event Occurred: refers patients who experienced the outcome of interest during the study period, including those who had a hospital readmission or an emergency department visit.

    • Censored: refers patients who did not experience the outcome of interest (hospital readmission or emergency department visit) during the follow-up period. These individuals remained under observation but did not have the event occur before the study’s conclusion or were lost to follow-up.

    • Survival time (time to event): This is the duration from the start to the event.

    Data quality assurance

    To ensure the integrity and reliability of the data collected in this study, several quality assurance measures were implemented throughout the data collection process. A structured questionnaire was initially developed based on a comprehensive review of relevant literature, to facilitate standardized data capture across all participating institutions. The questionnaire was pre-tested on a small sample of medical records to identify ambiguities, improve clarity, and refine variable definitions prior to full-scale implementation.

    Trained research assistants, all of whom were clinical pharmacists, conducted the data extraction. These data collectors underwent rigorous training on the study protocol, ethical considerations, operational definitions, and standard procedures for interpreting medical records. To assess and enhance inter-rater reliability, a pilot exercise was conducted in which 10% of patient charts were independently reviewed by two data collectors. Discrepancies were discussed and resolved through consensus, leading to adjustments in the protocol where necessary. Throughout the data collection period, Periodic supervisory audits were performed. The principal investigator and hospital-based site coordinators randomly reviewed approximately 10% of extracted data to verify accuracy and adherence to protocol. Any inconsistencies were addressed through targeted feedback and retraining sessions with the data collectors. Throughout the study period to ensure compliance with data collection protocols and to address any potential issues promptly. To minimize information bias, diagnoses were confirmed using multiple sources of documentation. Psychiatric disorders were validated by cross-referencing ICD-10 codes with therapist notes, treatment plans, and prescription records. Cardiovascular diagnoses were corroborated using physician-confirmed diagnoses, laboratory and imaging reports, and treatment documentation. In cases where exact diagnosis dates were missing, the earliest documented clinical evidence such as first mention of symptoms or treatment initiation was used as a proxy. To reduce the impact of missing data, records lacking essential variables (e.g., confirmed diagnoses or outcome data) were excluded from analysis. For less critical variables, a complete-case analysis was performed. Given the low frequency of missing data in those variables, imputation methods were not necessary. When feasible, missing details were recovered through triangulation across multiple record sources. To mitigate selection bias, a total population sampling strategy was used. All eligible patients with coexisting psychiatric and cardiovascular conditions who met the inclusion criteria and received care at any of the four participating hospitals were included. Additionally, all medical records and documentation were verified against the entries in the database to confirm accuracy and completeness.

    Data processing and analysis

    Data processing and analysis for this study were conducted using statistical software to ensure accurate interpretation of the findings. Following data collection, all questionnaires and medical record entries were reviewed for completeness and consistency. The data were then coded and entered into a secure electronic database to facilitate analysis. Descriptive statistics were generated to summarize the demographic and clinical characteristics of the study population. Categorical variables were described using frequency distributions and percentages, while continuous variables were summarized using means and standard deviations.

    To identify factors influencing survival outcomes, Cox proportional hazards regression analysis was performed. The primary outcomes were the time to hospital readmission and the time to the first emergency department visit, both measured in days from the date of discharge or study entry. The follow-up period spanned one year from the date of the first diagnosis or discharge, with censoring applied at the end of the study period or upon loss to follow-up. The assumptions of the Cox proportional hazards model were evaluated using the Schoenfeld residual test. To examine the relationship between baseline variables and patient survival, a two-step approach was employed. Initially, each baseline variable that satisfied the assumptions of the Cox proportional hazards model was analyzed individually using separate Cox regression models. Subsequently, variables with a P-value of less than 0.25 in the bivariate analysis were included in the multivariable analysis. However, final inclusion was not based solely on statistical criteria. We also incorporated variables based on their clinical relevance, biological plausibility, and established evidence from prior studies on mental health and cardiovascular outcomes. The Cox regression model was utilized to identify factors associated with the time to hospital readmission and emergency department visit. The results were reported as crude hazard ratios (CHR) and adjusted hazard ratios (AHR) with corresponding 95% confidence intervals, and statistical significance was determined at a P-value threshold of < 0.05. Additionally, multicollinearity among the independent variables was assessed using the variance inflation factor to detect and eliminate redundant variables that could bias the estimates. The overall mean VIF was calculated to be 1.21, which falls within the acceptable range of 1 to 5. Survival analysis was further conducted using Kaplan-Meier survival curves to illustrate survival functions, and the log-rank test was applied to compare survival distributions between patients who received mental health treatment and those who did not.

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  • Metabolite Succinate Linked to IBD Progression

    Metabolite Succinate Linked to IBD Progression


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    Northwestern Medicine investigators have identified a surprising culprit in the progression of inflammatory bowel disease: a naturally occurring metabolic compound in the gut, according to a study published in Nature Immunology.

    Inflammatory bowel disease (IBD), a chronic condition that includes Crohn’s disease and ulcerative colitis, is characterized by persistent inflammation of the gastrointestinal tract. It affects millions worldwide and can lead to debilitating symptoms such as abdominal pain, diarrhea, fatigue and weight loss. While the exact causes of IBD remain unclear, it is widely believed to be influenced by a mix of genetic, environmental and immune factors.

    The new study revealed that elevated levels of the metabolite succinate may actively contribute to the disease by disrupting the function of regulatory T-cells (Tregs), which are essential for maintaining immune balance and preventing runaway inflammation.

    The findings shed light on a previously unknown mechanism that could open new avenues for treatment, said Deyu Fang, PhD, the Hosmer Allen Johnson Professor of Pathology, who was senior author of the study.

    “Succinate is a normal metabolite we all have, but levels are increased in the blood, gut and stool of colitis patients and those with other inflammatory diseases,” Fang said. “We’ve known this for years. But how succinate causes inflammation, we don’t know much about.”

    In the study, Fang and his collaborators observed mice that consumed succinate in their drinking water. They found that higher succinate levels were associated with more severe symptoms of colitis, according to the findings.

    Next, investigators administered succinate to cultured Treg cells from mice. They found that succinate impairs the expression of FOXP3, a key protein essential for the suppressive function of Tregs. This disruption makes FOXP3 more vulnerable to degradation. As a result, Tregs lose their ability to control inflammation, leading to more severe colitis in mouse models.

    Further experiments demonstrated that deleting the gene Dlst mimicked the effects of high succinate levels, resulting in reduced FOXP3 expression, impaired Treg function and increased gut inflammation. However, restoring FOXP3 levels in these cells reversed the damage, highlighting the central role of this protein in immune regulation.

    The study also examined samples from people with IBD and found that their Treg cells had lower levels of FOXP3, which correlated with higher succinate levels and more severe inflammation.

    “This gives us a better understanding of why people have colitis,” Fang said. “One of the reasons is that increased succinate impairs the Treg immunosuppressive function through a direct mechanism. That’s the clinical implication that will help us to understand the pathogenesis of the disease.”

    The discovery could pave the way for new therapeutic strategies aimed at restoring Treg function or targeting succinate metabolism to treat IBD more effectively, Fang said.

    Next, Fang and his colleagues will examine other immune cells in patients with IBD to understand how and why succinate levels are heightened in the disease, he said.

    “The bacteria that make succinate are actually ‘good’ bacteria and probiotic in the gut microbiome, not the bad ones, so it’s really puzzling the field,” Fang said. “We don’t know exactly why succinate levels increase in active disease and return to normal in recovery, but this study may provide a clue for us to understand.”

    Reference: Wang H, Hu D, Cheng Y, et al. Succinate drives gut inflammation by promoting FOXP3 degradation through a molecular switch. Nat Immunol. 2025;26(6):866-880. doi: 10.1038/s41590-025-02166-y

    This article has been republished from the following materials. Note: material may have been edited for length and content. For further information, please contact the cited source. Our press release publishing policy can be accessed here.

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  • Gastric cancer risk after Helicobacter pylori eradication in gastritis and peptic ulcer: a retrospective cohort study in Japan | BMC Gastroenterology

    Gastric cancer risk after Helicobacter pylori eradication in gastritis and peptic ulcer: a retrospective cohort study in Japan | BMC Gastroenterology

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  • Routine psychological problems screening in hospitalized inflammatory bowel diseases and its effect for progression-free survival from disease worsening | BMC Gastroenterology

    Routine psychological problems screening in hospitalized inflammatory bowel diseases and its effect for progression-free survival from disease worsening | BMC Gastroenterology

    To our knowledge, this study firstly investigated the effectiveness of routine screening IBDs-patients for psychological distress on the course of IBDs in a large center for the management of IBDs. Our findings demonstrated a significant disparity in psychological problems screening, particular for those with active disease, hospitalized IBDs with routine screening reported a better outcome of progression-free survival without disease worsening during a 12-month follow-up.

    The aetiology, severity and progression of such IBDs disorder are thought to be influenced by multiple factors, among which, psychological factors are identified as one of the major contributing factors based on the available evidence [13]. Based on data covering the UK primary care, which included 28,352 with UC and 20,447 with CD, patients with IBDs were more likely to develop anxiety (HR = 1.17 (95%CI: 1.11–1.24)) and depression (HR = 1.36 (95%CI: 1.31, 1.42)) as opposed to controls [14]. According to recent systematic review and meta-analysis, there was evidences for a significant association between symptoms of depression, anxiety and the risk of disease activity flare in IBDs during longitudinal follow-up, with an odds ratio of 1.69 (95%CI: 1.34, 2.13) [15]. In recent years, the brain-gut axis enabling the cross-talk between the nervous system, such as the central nervous system, autonomic nervous system and enteric nervous system, the endocrine system and the immune system was proposed to explain the above-mentioned observations. According to the preliminary study, psychological problems is involved in the permeability, motility, sensitivity and secretion of the intestine system, and then impacts neuroendocrine immune regulation and damages the intestinal immune function and microbiota homeostasis to promote the development and reactivation of intestinal inflammation in animal models [16, 17]. In turn, disordered gut homeostasis in IBD was responsible for driving the brain pathology, exacerbating inflammatory response in the central nerve system, and resulting in anxiety- and depression-like behavior [18]. Besides the gut-brain axis mechanism, chronic psychological problems could also activate inflammatory response through the sympathetic and parasympathetic nervous system, and a certain degree of inflammatory cytokines in the serum of depression and anxiety disorder patients were revealed in a systematic review published amongst 1718 studies [19]. Also, several results suggest that chronic psychological problems lead to activation of Hypothalamic-Pituitary-Adrenal Stress axis and increased glucocorticoid release failing to modulate inflammatory activity. The form of chronic inflammation will support the pathophysiologic cycle of neurotoxicity, structural neural damage, and diminish the activity and level of brain-derived neurotrophic factors leading to a significant decrease of the therapeutic factors in clinical depression [20]. As a result, identifying the temporal trajectory of psychological disturbances may allow greater insight into understanding the progression of subclinical events as potential ground for disease severity in IBDs. Furthermore, help better interventions in controlling disease to reduce burden of illness and improve quality of life.

    As a result, there is a need for psychological distress screening in IBDs care settings. Whereas, the current approach to psychosocial intervention suggests that clinicians are intervening too late during patient care [6]. In order to address these gaps, we addressed mental-health disorders in time during busy clinical appointments and provided available resources for appropriate screening and treatment referrals to psychological doctors. According to our results, chose to 30.4% of cases were identified to be at risk of anxiety and 25.8% of depression in the screening group, which was consistent with previous researches [21], demonstrating that the implementation of routine psychological problems screening for hospitalized IBDs could effectively detect alterations in psychological status and distinguish cases presenting with risk of psychological problems hospitalized IBDs population to overlook patients who need and could benefit from early psychological interventions.

    According to our results, patients in screening cohort were more likely to report a longer length of hospital stay, reflecting the fact that depression and/or anxiety disorder could contribute to exacerbating symptoms to prolong the hospital stay in hospitalized IBDs, which was consistent with previous research reporting the OR for hospital length-of-stay in cohort with anxiety and depression disorders amongst 1,718,736 IBDs were 0.05 (95%CI: 0.03, 0.07), p < 0.00122. As a result, the significantly longer hospital stay due to psychiatric comorbidities might also lead to a higher rate of hospital-acquired conditions including venous thromboembolism and difficile infection, which was observed in screening cohort than controls. Furter more, IBDs related psychological disorders were able to reduce medication adherence, which was considered as both an outcome and a risk factor of this vicious circle, and then result in worsening management and prognoses of disease [23]. Consequently, screening and managing psychological comorbidities in IBDs patients during the hospitalization could effectively reduce flare-ups, decrease non-adherence to medications and increase adherence for outpatient follow up, thus potentially improve clinical outcomes [22, 24]. Relaxation, IBD psychoeducation, cognitive restructuring, distraction and social skills were reported as the most utilized interventions for depression and anxiety in IBDs in systematic review, and have shown efficacy in decreasing psychological stress levels and effectively improves inflammatory biomarkers in IBDs [25, 26]. In accordance with the above-mentioned evidences, our findings also proved a wide impact in terms of long-term progression-free survival without IBDs-related emergency visits, readmission and surgeries after integrating screening and referral to treatment for psychological stress.

    The previous nomogram model constructed based on the factors influencing the HR-QoL of early patients with IBDs showed that disease activity and psychological distress were the most significant factors affecting the QoL of cases with IBDs, with the highest proportions in the model [27]. On basis of current evidence from systematic review of prospective cohort studies, appropriate intervention for patients identified with psychological factors would reduce IBDs symptom exacerbation, and therefore improve patients’ quality of life [28]. Our results found that patients in screening group revealed a greater HR-QoL during a 12-month follow-up as compared to controls, which provided the evidence that patients with IBDs and anxiety and/or depression might benefit from certain routine screening for psychological issues and referral to effective interventions.

    This study has several limitations. First, investigators responsible for outcome assessment failed to keep blind due to the nature of the retrospective study. Second, we did not enroll a healthy control. Third, we did not record the other confounders and infer causality for the described association. In the future, a well-designed, randomized, controlled study with a large sample was needed to verify the findings of the present study.

    In conclusion, patients in screening cohort had a better progression-free survival from IBDs-related emergency visits, readmission and surgeries after discharge than those without these conditions, and also exhibited a better QoL during a 12-month follow-up period. It should be encouraged that hospitalized IBDs in active phase should be routinely screened for psychological problems that could influence disease course.

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  • Colorectal polyp prevalence and adenoma detection rates in an Iranian cohort: a prospective study | BMC Gastroenterology

    Colorectal polyp prevalence and adenoma detection rates in an Iranian cohort: a prospective study | BMC Gastroenterology

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    Lipid metabolism disturbance and immune dysfunction in HBV-related acute-on-chronic liver failure: a retrospective cohort study | BMC Gastroenterology

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  • Prevalence and molecular characteristics of Klebsiella pneumoniae harb

    Prevalence and molecular characteristics of Klebsiella pneumoniae harb

    Introduction

    Klebsiella pneumoniae is not only a common pathogen causing nosocomial infections but also an important cause of community-acquired infections, that colonizes human mucosal surfaces such as the nasopharynx and the gastrointestinal tract.1 In recent years, with the prevalence of multidrug-resistant and hypervirulent K. pneumoniae in the world, the incidence rate of K. pneumoniae infections has risen dramatically, such as urinary tract infection, pneumonia, liver abscess, and so on.1 Compared with the classical K. pneumoniae (cKp), hypervirulent K. pneumoniae (hvKp) possesses higher toxicity, which can cause severe infection in immunocompromised people, with high pathogenicity and mortality.2 Although many factors contribute to the high virulence of the hvKp, virulence factors, including capsule, siderophores, lipopolysaccharide, and fimbriae, play an essential role in the pathogenesis of several diseases.3–6 Numerous reports have shown that K1 and K2 serotypes are strongly associated with hvKp among 79 serotypes of K. pneumoniae.7,8 Additionally, some genes, rmpA, iutC, and ybtA, which are responsible for the production of high viscosity, iron-acquiring factors, aerobactin and yersinia actin, respectively, have been associated with the hypervirulence of K. pneumoniae.5,9 Recently, the pks (polyketide synthase) gene cluster, as a new virulence factor, has aroused great public concern.10

    The pks gene cluster is a genetic locus that was first described in some Escherichia coli strains from the B2 phylogroup by Nougayrede in 2006.11 It contains 19 genes (clbA to clbS) with 54 kb and encodes a multi-enzyme complex capable of producing a genotoxin called colibactin. Previous studies have shown that colibactin can cleave host DNA double strands, resulting in cell cycle arrest, DNA damage, and mutations.12,13 Moreover, it increases the likelihood of serious complications of bacterial infections. For instance, production of colibactin by pks+ E. coli exacerbates lymphopenia associated with septicemia and increases the morbidity and mortality of urosepsis and meningitis in immunocompromised mice.14,15 Additionally, pks-positive E. coli has been associated with mutations in colorectal cancer.13,16,17 Subsequently, the pks island has also been found in several other members of the Enterobacteriaceae family, such as Citrobacter koseri, K. pneumoniae, and Enterobacter aerogenes, but was found to be relatively infrequent.18–20 A study in Europe showed that the prevalence of the pks gene cluster was 34% in E. coli strains of phylogenic lineage B2, but only 3.5% in K. pneumoniae clinical isolates.18 While the predominance of pks genes in bloodstream-sourced K. pneumoniae is approximately 25.6% and 26.8% in Taiwan and Changsha, respectively,21,22 little is known about its epidemiology in clinical isolates from cancer patients in China.

    Given the potential role of the pks gene cluster in cancer and its association with hypervirulence, it is crucial to investigate the prevalence and molecular characteristics of pks-positive K. pneumoniae in patients with cancer. This study aimed to address this gap by examining the presence of the pks gene cluster and analyzing the clinical and molecular features of pks-positive K. pneumoniae isolates from patients with cancer in China. Understanding the distribution and characteristics of these isolates will provide valuable insights into their pathogenic potential, and inform clinical practice and epidemic surveillance.

    Materials and Methods

    Bacterial Isolates Collection

    A total of 279 non-repetitive clinical K. pneumoniae isolates were obtained from all cancer patients in China at Cancer Hospital Chinese Academy of Medical Sciences, Shenzhen Center between January 2022 and June 2024. All cases were diagnosed according to the International Classification of Diseases, 10th Revision (ICD-10) and presented with clinical evidence of infection (including clinical symptoms, laboratory indicators, and microbiological evidence). These strains were isolated from diverse specimens, including sputum, blood, urine, drainage fluid, bile, catheter, gastric juice, vaginal secretion, and wound secretion. The collection, isolation, and culture of all clinical specimens must be performed under aseptic conditions and comply with the standards of CLSI (Clinical and Laboratory Standards Institute) guidelines and WHO Laboratory Biosafety Manual. After being isolated and purified, these strains were preserved at −80 °C in a tube containing 20% glycerol for a long time. The full 10 μL loop of colonies after balancing to room temperature were spread onto the Columbia blood agar (Oxoid, Brno, Czech Republic) and incubated at 37 °C for 24 h in 5% CO2 atmosphere. At the same time, the information of these patients was also collected. This study was approved by the hospital ethics committee (Approval No: JS2024-18-1).

    Identification and Antimicrobial Susceptibility Testing

    Isolates were identified by by matrix-assisted laser desorption-ionization time-of-flight mass spectrometry (MALDI-TOF MS; bioMerieux SA, Lyons, France) according to the manufacturer’s protocol. Antimicrobial susceptibility testing was performed using automatic microbial identification and the antibiotic sensitivity analysis system, Vitek 2 Compact (bioMerieux SA, Lyons, France). The results of the antibiotic sensitivity test were determined based on the breakpoints recommended in the guidelines of the 2023 Clinical and Laboratory Standards Institute (CLSI).

    Identification of the Pks Gene Cluster in Clinical K. pneumoniae Isolates

    Genomic DNA was extracted from 279 clinical isolates using a bacterial DNA extraction kit (Tiangen Biochemical Technology, Beijing, China) and quantified using Qubit 4.0 according to the manufacturer’s instructions. PCR was used to detect pks genes (clbA, clbB, clbN, and clbQ). The primers and amplification conditions used in the present study for pks detection are listed in Table 1.11 The PCR products were visualized using 2% agarose gel electrophoresis.

    Table 1 Primers Used for Amplification of the Tested Pks Genes

    The positive of pks gene clusters were verified by blasting whole genomic coding ORFs against E. coli clb reference genes (GenBank accession: AM229678.1)11 with both identity and coverage threshold greater than 80%.

    Whole-Genome Sequencing and Analysis

    A total amount of 0.2 μg of DNA per sample was used as input material for DNA library preparations using the Rapid Plus DNA Lib Prep Kit (RK20208) (Beijing Baiao Innovation Technology, China). Subsequently, the library quality was assessed on the Agilent 5400 system (AATI) and quantified by real-time PCR (1.5 nM). The qualified libraries were pooled and sequenced on Illumina platforms (Illumina, San Diego, CA, USA). Sequencing reads were assembled using Shovill (1.1.0) (https://github.com/tseemann/shovill), and the contamination and completeness of the assembled genome were assessed using CheckM (v1.2.2).23 Whole-genome annotation was performed using the Prokka software (1.14.6).24

    SNP distance and phylogenetic tree construction were performed for pks-positive strains. Phylogenetic analysis was conducted using IQ-TREE software (version 2.3.5) and visualized with the ggtree package in R (version 4.4.2). The K159 strain was used as the reference genome, and core genomic SNPs (cgSNPs) were identified using Snippy (v4.6.0) (https://github.com/tseemann/snippy).

    Sequence types (ST) and serotypes were determined from whole-genome data using Kleborate (2.2.0)25 against pubMLST database26 and Kaptive database.27

    Virulence genes and antibiotic resistance genes were identified using the ABRicate (1.0.1)28 and AMRFinderPlus (3.11.14)29 from genome assembly, respectively.

    Statistical Analysis

    All analyses were performed with the Statistical Package for the Social Sciences version 28.0 (SPSS, Chicago, IL, USA). Significance of differences in frequencies and proportions was tested by the χ2 test or Fisher’s exact test. A P-value <0.05 was considered statistically significant.

    Results

    Clinical Characteristics of Pks-Positive K. pneumoniae

    Among 279 K. pneumoniae isolates, 35 (12.54%) pks gene cluster positive representatives were identified, which were mainly isolated from the sputum (20, 57.14%). The clinical characteristics of the patients who isolated K. pneumoniae isolates are presented in Tables S1 and S2. The average age of patients with pks-positive K. pneumoniae was 59, and most of them were male (27, 77.14%). And the diagnosis of lung cancer (15, 42.86%) was predominant in patients harbouring pks-positive isolates, followed by gastric cancer (3, 8.57%). But comparing with patients infected by pks-negative K. pneumoniae, there was no significant difference in age, specimen source, infections position, and sexes in patients harbouring pks-positive isolates (P > 0.05) (Table 2).

    Table 2 Clinical Data of Patients Infected with Pks-Positive and Pks-Negative K. pneumoniae

    Antimicrobial Susceptibility of Pks-Positive Isolates

    There was no significant difference in rates of susceptibility between the pks-positive and pks-negative K. pneumoniae isolates to most antibiotics, including β-lactam/β-lactamase inhibitors, fluoroquinolones, cephamycin, aminoglycosides, and carbapenems, except for sulfonamides (Tables S3 and S4). For example, the susceptibility rates of cefoperazone sulbactam, piperacillin tazobactam, cefuroxime, ceftazidime, ceftriaxone, cefepime, amikacin were 100%, 85.71%, 74.29%, 91.43%, 85.71%, 88.57%, and 100% in the pks-positive K. pneumoniae, and compared with the pks-negative K. pneumoniae, where the respective rates for these antibiotics were 95.90%, 88.52%, 72.95%, 84.02%, 77.05%, 84.02%, and 98.36% (Table 3). Although there was a tendency that the pks+ K. pneumoniae isolates were less resistant to carbapenem agents tested versus pks-isolates (100% vs 98.36%), the difference was insignificant. Sulfamethoxazole was the only agent to which pks-positive isolates were significantly more susceptible than pks-negative isolates (100% vs 75.82%, P<0.001) (Table 3).

    Table 3 Susceptibility of Pks-Positive and Pks-Negative K. pneumoniae to Antimicrobials

    Molecular Characteristics of Pks-Positive K. pneumoniae

    In this study, whole-genome sequencing of 35 pks+ K. pneumoniae isolates was performed, and the detailed quality assessment results are shown in Table S5. The average genome size of 35 pks+ K. pneumoniae isolates was 6.02 Mbp, and the average GC content was 57.38%. The average largest were 0.72 Mbp, and N50 scaffolds were 0.29 Mbp in length, indicating the high assembling quality. The result of genome sequencing showed that virulence associated serotype K1 (17, 48.57%) was the predominant serotype, and K2 accounted for 25.71% in pks-positive K. pneumoniae (Figure 1). Six other K serotypes (K116 (3), K113 (2), K20 (1), K25 (1), K57 (1), and K62 (1)) accounted for 25.72% of isolates.

    Figure 1 Phylogenetic tree based on SNP sites in core genes of 35 pks-positive strains.

    Among the 35 pks-positive K. pneumoniae, the multilocus sequence typing showed that the predominant sequence types were ST23 (19, 54.29%) and ST65 (8, 22.86%), while another six STs each had no more than 3 strains, ST133 (3, 8.57%), ST268 (1, 2.86%), ST348 (1, 2.86%), ST380 (1, 2.86%), ST592 (1, 2.86%), and ST792 (1, 2.86%) (Figure 1). The whole genomic phylogeny and SNP distance were inferred, and we found that there is no direct and recent transmission (cgSNP differences less than 20) among ST23 and ST65 isolates (Figure 1).

    Virulence genes were prevalent in pks-positive isolates, particularly the siderophore systems (aerobactin, enterobactin, salmochelin, and yersiniabactin) which played different roles in infection within the host. In 35 pks-positive isolates, Enterobactin synthase genes (entAB, fepC) and yersiniabactin siderophore system genes (ybtA/E/P/Q/S/T/U/X, irp1, irp2) were at least 97.14%, meanwhile the aerobactin siderophore synthesis system genes (iucA/B/C/, iutA) and salmochelin genes (iroB/C/D/N) were at least 85.71% (Table 4). Furthermore, rmpA genes, which were the positive regulator of the mucoid phenotype, and peg-344, which could encode an intracellular transporter protein, were, respectively, found in 62.86% and 54.29% of pks-positive isolates (Table 4).

    Table 4 Virulence Genes and Drug Resistance Genes of Pks-Positive K. pneumoniae

    As for antibiotic resistance genes, pks-positive isolates harbored some β-lactamase genes, including blaCTX-M, blaTEM, and blaSHV. Only four isolates proved positive for CTX-M-1 group, and two isolates proved positive for CTX-M-9 group. Additionally, the screen of SHV β-lactamase genes showed that the frequencies of SHV-11, SHV-75, SHV-26, and SHV-207 were 30 (85.71%), 3 (8.57%), 1 (2.86%), and 1 (2.86%), respectively. And only two isolates were blaTEM-1 positive. However, no pks-positive isolates proved positive for the genes that confer resistance towards carbapenems.

    Discussion

    The pks gene island, encoding the genotoxin colibactin, has garnered significant attention due to its ability to induce DNA double-strand breaks and transient G2-M cell cycle arrest in host cells.12 This genotoxic activity suggests that colibactin may contribute to various disease entities, including newborn meningitis, urinary tract infections, bloodstream infections, and potentially cancer development.15,22,30 In addition, some studies reported that the pks-positive E. coli was more highly represented in CRC patients and could promote human CRC development.17,31 Our study is the first to investigate the prevalence and molecular characteristics of K. pneumoniae harboring the pks island in Chinese cancer patients, providing valuable insights into its epidemiology and clinical significance in this specific population.

    Up to now, there have been few epidemic reports on emerging pks-positive K. pneumoniae. In Europe and Iraq, the occurrence of pks-positive K. pneumoniae was 3.5%18 and 7.14%,20 respectively. In this study, the prevalence of the pks gene cluster among K. pneumoniae isolates was 12.54%, which was higher than those reported in the literature. But in two previous studies conducted in Taiwan and Changsha, the positive rates of pks-positive K. pneumoniae isolated from blood was 16.8%32 and 26.8%,22 respectively. And some studies revealed that the prevalence of pks gene in E. coli was high, ranging from 29.2% to 72.7%.31,33,34 Therefore, we found that the epidemiological distribution of pks-positive strains exhibits regional and interspecies differences, which may be associated with environmental, host, and pathogen factors.

    Colibactin encoded by the pks gene cluster has been shown to induce host DNA damage, thus may contribute to higher mutation rates that drive the occurrence of tumors. By analyzing 3668 Dutch samples of different cancer types, a study found that the colibactin was present in a variety of tumors.35 Our findings backed up the above results, which documented pks-positive K. pneumoniae had been isolated from different types of cancer patients. Jens Puschhof et al proved that the pks gene cluster was present at a higher frequency in colorectal cancer compared to other types of cancer.35 And the presence of pks-positive K. pneumoniae has been found in 4–27% colon cancer patients.18,21,32,36 However, our findings revealed that pks-positive K. pneumoniae isolates were predominantly associated with lung cancer patients (42.86%), followed by gastric cancer, which was different from the above researches that reported higher prevalence in colorectal cancer patients. This may be due to the specific patient population and sampling bias, as only parenteral specimens were collected. However, this highlights the potential role of pks-positive K. pneumoniae in various types of cancer, not limited to colorectal cancer. Further studies are needed to elucidate the specific mechanisms by which pks-positive K. pneumoniae contributes to cancer development and progression.

    There are many similarities between pks-positive K. pneumoniae and hvKp. Firstly, previous studies have revealed that hvKp were almost exclusively of serotype K1 or K2, and ST23 and ST65 were predominant sequence types.5,7 On the other hand, the hvKp K1 strains were strongly associated with ST23, while the hvKp K2 strains belong to different STs (ST65, ST86, and others).5,8 In our study, the great majority (74.28%) of pks-positive isolates belonged to K1 or K2 serotype. And all K1 strains belong to ST23, whereas K2 strains were divided into two major clades, ST65 and ST380. To investigate whether there is transmission or possible outbreaks among single ST isolates, whole-genomic phylogeny and SNP distance were inferred, and we found that there is no direct and recent transmission (cgSNP differences less than 20) among ST23 and ST65 isolates, suggesting the patients get these infections from different sources. Two ST133 isolates, k130 and k131, showed almost no cgSNP differences (Figure 1), suggesting direct transmission among their host patients. However, the mechanism of transmission still needs further study. Secondly, another study suggested that hvKp were positive for several virulence factors, such as iucA, iroB, peg-344, rmpA, and so on.5,7 Our study found that pks-positive isolates generally carried several virulence genes. Additionally, the high prevalence of rmpA and peg-344 genes indicates that these isolates may exhibit a mucoid phenotype, which is associated with increased resistance to phagocytosis and host immune responses.5 Therefore we assumed that the emerging pks genotoxic trait is associated with the virulence genes of hvKp. We also found that the pks-positive strains in this study showed high sensitivity to most antibiotics, which is likely due to the fact that most of these isolates belong to K1 and K2 serotype to protect bacteria from phagocytosis and inhibit the host immune response. And compared with pks-negative strains, pks-positive strains showed higher sensitivity to sulfamethoxazole (P<0.05), which provided an important reference for antibiotic treatment. Although the rate of MDR in pks-positive isolates is low at present, the presence of β-lactamase genes, such as blaCTX-M, blaTEM, and blaSHV, indicates that these isolates have the potential to develop multidrug resistance. Therefore, continued surveillance of antimicrobial resistance patterns in pks-positive K. pneumoniae is essential to guide appropriate treatment strategies and prevent the emergence of multidrug-resistant strains.

    While our study provides important insights into the prevalence and molecular characteristics of pks-positive K. pneumoniae in cancer patients, several limitations should be acknowledged. The sample size was relatively small, and only parenteral specimens were included, which may limit the generalizability of our findings. Additionally, the study was conducted in a single center, and further multicenter studies with larger sample sizes are needed to confirm our results.

    Recently, it was described that the exposure to pks-positive E. coli is responsible for mutational signature in colorectal cancer, so it seems that pks-positive bacteria can induce mutation of CRC driver genes and, therefore, pks may become a marker of CRC carcinogenesis and therapy.31 Future research should focus on elucidating the specific mechanisms by which pks-positive K. pneumoniae contributes to cancer development and progression. Additionally, longitudinal studies are needed to monitor the evolution of antimicrobial resistance in these isolates and to develop targeted therapeutic strategies.

    Conclusion

    Our study highlights the potential pathogenicity of pks-positive K. pneumoniae in cancer patients in China, emphasizing the need for close clinical attention and epidemic tracking. The findings underscore the importance of continued surveillance and research to better understand the role of this genotoxic pathogen in cancer-associated infections.

    Ethics Statement

    This study was approved by the ethics committee of Cancer Hospital Chinese Academy of Medical Sciences, Shenzhen Center (Approval No. JS2024-18-1). This study was retrospective and associated with bacterial drug susceptibility and the genetic information of the specimens, hence our ethical petition for exemption from informed consent was accepted. All patients have been informed that their samples will be used for research and have signed informed consent for sample collection. The data of all patients in this study were collected anonymously and ensured the confidentiality of their information. This study was conducted in accordance with the guidelines set out in the Declaration of Helsinki.

    Acknowledgments

    We gratefully acknowledge the support and resources provided by the Microbiology Laboratory, Cancer Hospital Chinese Academy of Medical Sciences, Shenzhen Pathogen Infection Research Alliance (SPIRA) and Department of Clinical Laboratory, Shenzhen Third People’s Hospital.

    Funding

    This research was supported by Sanming Project of Medicine in Shen zhen (No.SZSM202311002) and Science and Technology Program of Shenzhen (Grant Nos. KCXFZ20230731100901003, KJZD20230923115116032, JCYJ20210324131212034).

    Disclosure

    The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.

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