Category: 8. Health

  • Powerful optical technique can analyze the biochemical fingerprints of vaginal fluid

    Powerful optical technique can analyze the biochemical fingerprints of vaginal fluid

    Vaginal health is tightly linked to the balance of bacteria in the microbiome, especially certain species of Lactobacillus. When this balance is disturbed-a condition known as dysbiosis-it can lead to increased risk of infections, complications during pregnancy, and other long-term health concerns. Despite this risk, existing diagnostic methods often fall short, especially in detecting Lactobacillus iners, an important vaginal bacterium, which doesn’t always show up under a microscope or in lab cultures. Researchers at Vanderbilt University are working to change that by using a powerful optical technique known as surface-enhanced Raman spectroscopy (SERS) to analyze the biochemical fingerprints of vaginal fluid.

    In a pilot study published in Biophotonics Discovery, the researchers collected vaginal fluid samples from 19 participants during routine gynecological exams. They used two different devices-a laboratory Raman microscope and a portable Raman spectrometer-to record the SERS spectra of each sample. These spectra reveal the biochemical makeup of the fluid, including the presence of proteins, lipids, organic acids, and sugars. The team then used a molecular technique called quantitative PCR to identify whether key microbes were present, focusing on Lactobacillus inersLactobacillus crispatusGardnerella vaginalis, and Streptococcus agalactiae.

    By comparing the SERS spectra of samples with different microbial compositions, the researchers found consistent biochemical signatures. The presence of Gardnerella vaginalis (G. vaginalis), a microbe linked to bacterial vaginosis, was marked by increased protein and lipid signals and decreased organic acid content-trends that align with what’s known about its role in disrupting the vaginal environment. In contrast, Lactobacillus iners (L. iners), a protective microbe that can be difficult to detect with current methods, was associated with elevated levels of organic acids and reduced signals from proteins and polysaccharides. These patterns were visible not only with the high-end lab equipment but also with the more accessible portable device.

    Notably, the samples containing G. vaginalis were from participants without any diagnosed infections or symptoms. This suggests that SERS may be able to identify early-stage or subclinical shifts in the microbiome before they become clinically evident-a critical advance for prevention and early intervention.

    The findings also highlight how SERS could be used in routine monitoring of vaginal health, especially if integrated into point-of-care devices. The portable Raman system produced results similar to the benchtop microscope, showing that accurate biochemical readings don’t necessarily require a full laboratory setup.

    While this was a pilot study and only a limited number of bacterial species were evaluated, the study provides proof of concept for using SERS to detect meaningful changes in the vaginal microbiome. Future studies aim to expand the participant pool and use genetic sequencing for broader microbial analysis. But even in its current form, the research demonstrates a promising path forward for better, faster, and less subjective diagnostics in women’s health.

    Source:

    SPIE–International Society for Optics and Photonics

    Journal reference:

    Rourke-Funderburg, A. S., et al. (2025) Investigating microbiota and biochemical changes in vaginal fluid toward point-of-care microbial monitoring using surface-enhanced Raman spectroscopy. Biophotonics Discovery. doi.org/10.1117/1.BIOS.2.4.042102.

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  • No Lyme Disease Vaccine This Year — Vax-Before-Travel

    No Lyme Disease Vaccine This Year — Vax-Before-Travel

    (Vax-Before-Travel News)

    Valneva SE announced today that it continues co-developing VLA15, a Phase 3 vaccine candidate, the only Lyme disease program in late-stage clinical development.

    VLA15 is a multivalent recombinant protein vaccine that targets six serotypes of Borrelia, representing the most common serotypes found in the United States and Europe.

    On August 12, 2025, Valneva confirmed its development partner, Pfizer Inc., is currently executing the randomized, placebo-controlled Phase 3 field efficacy study. The participants will be monitored for the occurrence of Lyme disease cases until the end of the 2025 Lyme disease season in the U.S. (end of October), with topline data expected as soon as all Lyme disease cases are confirmed.

    In a press release, Valneva wrote that Pfizer aims to submit a Biologics License Application to the U.S. Food and Drug Administration and a Marketing Authorization Application to the European Medicines Agency in 2026, subject to positive Phase 3 data.

    Lyme disease is the most common tickborne disease in the United States and Europe.

    Lyme disease remains an expanding health risk in the U.S. It is a bacterial illness transmitted to humans through the bite of infected ticks. These ticks become infected by feeding on animals that carry the bacteria in their blood.

    Over 89,000 cases of Lyme disease were reported to the U.S. CDC by state health departments and the District of Columbia in 2023. Recent estimates using other methods suggest that approximately 476,000 people may be diagnosed and treated for Lyme disease each year in the U.S.

    The incidence of Lyme disease in Europe is highest in the Scandinavian and Baltic states in northern Europe and Austria, the Czech Republic, Germany, and Slovenia in central Europe.

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  • Ultra-Processed Foods Could Sabotage Weight Loss, Even on a ‘Healthy’ Diet : ScienceAlert

    Ultra-Processed Foods Could Sabotage Weight Loss, Even on a ‘Healthy’ Diet : ScienceAlert

    Ultra-processed foods already have a lousy reputation – and now a new study suggests that even ‘healthy’ versions of them can significantly undermine your weight-loss efforts.

    Researchers from the UK and US analyzed data from 50 overweight people who completed two diet programs on separate occasions. Both diets matched in terms of nutrition – with the same amounts of fat (including saturated fats), carbs, fiber, salt, and even fruits and vegetables.

    The key difference is one diet was built around ultra-processed foods (UPFs), and the other focused on minimally processed foods (MPFs). The UPF diet included the likes of breakfast oat bars and lasagne ready meals, while the MPF one featured overnight oats and homemade spaghetti bolognese.

    Related: Ultra-Processed Foods Linked to Early Signs of Parkinson’s Disease

    Both diets resulted in weight loss. But the MPF diet was associated with shedding twice as much weight as the UPF diet, on average. Participants also lost more unhealthy body fat while on the MPF diet and reported better control over unhealthy food cravings.

    “Previous research has linked ultra-processed foods with poor health outcomes,” says clinical scientist Samuel Dicken, from University College London (UCL). “But not all ultra-processed foods are inherently unhealthy based on their nutritional profile.”

    “The main aim of this trial was to fill crucial gaps in our knowledge about the role of food processing in the context of existing dietary guidance, and how it affects health outcomes such as weight, blood pressure, and body composition, as well as experiential factors like food cravings.”

    Greater weight loss was seen with the minimally processed food diet. (Dicken et al., Nat. Med., 2025)

    While the overall reductions in weight were only 2 percent for the MPF diet and 1 percent for the UPF diet, the researchers point out the short timespan of the study: eight weeks for each diet, with a gap of four weeks in between.

    The changes seen here could quickly add up. In combination with other factors that contribute to a healthy and effective diet, avoiding ultra-processed foods could make a noticeable difference over time.

    “Though a 2 percent reduction may not seem very big, that is only over eight weeks and without people trying to actively reduce their intake,” says Dicken.

    “If we scaled these results up over the course of a year, we’d expect to see a 13 percent weight reduction in men and a 9 percent reduction in women on the minimally processed diet, but only a 4 percent weight reduction in men and 5 percent in women after the ultra-processed diet.”

    The trial was relatively small and excluded people with dietary restrictions, but it offers more evidence on how we can tackle our growing obesity crisis – and highlights the difference that following nutritional guidelines in diets can have.

    “The global food system at the moment drives diet-related poor health and obesity, particularly because of the wide availability of cheap, unhealthy food,” says Chris van Tulleken, a global health and infection researcher at UCL.

    “This study highlights the importance of ultra-processing in driving health outcomes in addition to the role of nutrients like fat, salt, and sugar.”

    The research has been published in Nature Medicine.

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  • GLP-1s Linked With Increased Risk of Optic Nerve Disorders

    GLP-1s Linked With Increased Risk of Optic Nerve Disorders

    Semaglutide or tirzepatide treatment among patients with diabetes was associated with an increased risk of optic nerve disorders, such as nonarteritic anterior ischemic optic neuropathy (NAION), according to a study published in JAMA Network Open.1

    “Glucagon-like peptide-1 receptor agonist (GLP-1RA) medications have transformed the treatment of type 2 diabetes (T2D) and obesity, with associated reductions in cardiovascular and nephrological complications,” wrote authors of the study. “Semaglutide and tirzepatide are second-generation GLP-1RA medications approved by the FDA for the treatment of diabetes and obesity.”

    GLP-1s and their ability to transform diabetes care and obesity management have been increasingly noticeable as of late. According to a KFF Health tracking poll, at least 12% of US adults said they’ve taken a GLP-1RA at some point in time. For the sheer recognition of these medications amongst the public, 32% of US adults said they’ve heard “a lot” about GLP-1RAs, which is a 13% increase from 2023 to 2024.2

    Using target trial emulation framework, researchers conducted their study to determine the causal effects of GLP-1s on outcomes of optic nerve disorders. | image credit: PhotoArtHub / stock.adobe.com

    READ MORE: Initiation of Semaglutide Does Not Decrease Health Care Spending

    Despite the notable rise in GLP-1 use in recent history, this drug class is often associated with adverse effects typically related to gastrointestinal outcomes, such as nausea, vomiting, diarrhea, gastroparesis, and constipation.1,3 Recent studies, however, have shown associations between NAION and semaglutide use, leading to concerns of adverse outcomes among diabetes patients outside of the digestive system.

    “Several retrospective studies from 2024 and 2025 reported a potential association of semaglutide with NAION in patients with diabetes and patients with obesity,” they continued.1 “However, a meta-analysis of randomized clinical trials did not detect an association of GLP1-RA therapy, including semaglutide, with NAION.”

    With conflicting evidence reported in the past few years, researchers wanted to better determine the association between NAION and GLP-1 use—namely semaglutide and tirzepatide. They hoped the significant reach of study participants within this new cohort would better inform pharmacist and provider decisions when counseling patients with diabetes, obesity, or a general need for GLP-1RAs.

    “It remains unknown if semaglutide or tirzepatide is associated with other optic nerve and visual pathway disorders,” wrote the authors.1 “This study leveraged a nationwide, multicenter database of electronic health records (EHRs) of more than 118 million US patients to conduct rigorous target trial emulation in patients with T2D to examine associations of semaglutide or tirzepatide with optic nerve and visual pathway disorders, including NAION.”

    In this cohort study, researchers included EHR patient data from December 2017 to January 2023. Inclusion criteria called strictly for study participants with T2D, no previous diagnoses of eye disorders, and prescriptions for either semaglutide, tirzepatide, or another antidiabetic drug.

    Using target trial emulation framework, researchers conducted their study to determine the causal effects of GLP-1s on outcomes like NAION.4 With this specific study design, they separated participants into 2 groups: those prescribed the GLP-1RAs semaglutide or tirzepatide and those prescribed alternative antidiabetic medications.1

    Among patients reporting use of semaglutide, tirzepatide, or other antidiabetic medications, the main outcomes researchers explored were any first-time diagnoses of disorders of optic nerve and visual pathways. Some of these disorders included optic neuritis, NAION, optic atrophy, and more.

    The final analysis included a total of 159,398 patients, with an even split of 79,699 participants in the GLP-1RA group (mean age, 56.8 years; 51.7% women) and the other antidiabetic medications group (mean age, 56.2 years; 52.6% women).1

    Including all disorders explored in this study, the main associations between diabetes treatment and optic nerve disorders were only notable for NAION and “other” optic nerve disorders outside of those included in the study. However, among these associations, patients treated with semaglutide or tirzepatide were more likely to develop optic nerve disorders compared with patients on other antidiabetics.

    Indeed, a total of 35 patients (0.04%) on semaglutide or tirzepatide reported NAION diagnoses compared with just 19 (0.02%) from the antidiabetic medication group. Furthermore, 93 participants (0.12%) reported other various optic nerve disorders compared with just 54 patients in the antidiabetic group.

    “In a population of patients with T2D who had no prior diagnosis of eye diseases, this cohort study found that semaglutide or tirzepatide compared with other antidiabetic medications was associated with a differential risk of optic nerve and visual pathways, including increased risk of NAION and other optic nerve disorders, but not optic neuritis, papilledema, optic atrophy, or optic disc orders,” they continued.1

    With the overall risk of developing optic nerve disorder being minimal, the researchers findings are still significant enough to inform future use cases of any antidiabetic drug. Despite aligning with previous findings from 2024 and 2025, researchers believe further investigation is needed to replicate and confirm findings from the current study.

    “Future studies are needed to replicate these findings, explore underlying mechanisms, identify individuals at increased risk for these potential complications, and examine other eye disorders,” concluded the authors.1

    READ MORE: Diabetes Resource Center

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    References
    1. Wang L, Volkow ND, Kaelber DC, Xu R. Semaglutide or tirzepatide and optic nerve and visual pathway disorders in type 2 diabetes. JAMA Netw Open. 2025;8(8):e2526327. doi:10.1001/jamanetworkopen.2025.26327
    2. Montero A, Sparks G, Presiado M, et al. KFF Health tracking poll May 2024: the public’s use and views of GLP-1 drugs. KFF. May 10, 2024. Accessed August 12, 2025. https://www.kff.org/health-costs/poll-finding/kff-health-tracking-poll-may-2024-the-publics-use-and-views-of-glp-1-drugs/
    3. Catanese L. GLP-1 diabetes and weight-loss drug side effects: “Ozempic face” and more. Harvard Health Publishing. February 5, 2024. Accessed August 12, 2025. https://www.health.harvard.edu/staying-healthy/glp-1-diabetes-and-weight-loss-drug-side-effects-ozempic-face-and-more
    4. Fu EL. Target trial emulation to improve causal inference from observational data: what, why, and how? J Am Soc Nephrol. 2023 Aug 1;34(8):1305-1314. doi: 10.1681/ASN.0000000000000152.

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  • New COPD diagnostic schema identifies additional individuals at risk of poor respiratory outcomes

    New COPD diagnostic schema identifies additional individuals at risk of poor respiratory outcomes

    The diagnosis of chronic obstructive pulmonary disease, or COPD, is improved by incorporating CT lung imaging and respiratory symptoms. This fresh, multidimensional approach better identifies patients who are at risk of poor respiratory outcomes, while ruling out those who have airflow obstruction without respiratory symptoms or structural lung disease, Surya Bhatt, M.D., and colleagues report in the Journal of the American Medical Association.

    This new COPD diagnostic schema, which includes chest imaging, respiratory symptoms and spirometry, identified additional individuals at risk of poor respiratory outcomes.”


    Surya Bhatt, M.D., professor, Department of Medicine, University of Alabama at Birmingham Marnix E. Heersink School of Medicine and director, Center for Lung Analytics and Imaging Research

    The schema includes airflow obstruction on spirometry as the major criterion and minor criteria based on chest imaging and respiratory symptoms. Imaging includes visual signs of emphysema and airway wall thickening on computed tomography, and symptom-based criteria consider difficulty breathing, reduced quality of life and the presence of chronic bronchitis. Under the new framework, a patient must have airflow obstruction and at least one minor criterion or, in the absence of airflow obstruction or if lung function tests are not available, at least three of five minor criteria.

    Bhatt and colleagues found that, among 9,416 participants enrolled in a multicenter cohort, those newly diagnosed with COPD by the schema had greater all-cause and respiratory-specific mortality, more frequent exacerbations, and faster lung function decline compared with people classified as not having COPD based on the new classification. This new diagnostic schema included additional individuals with high respiratory morbidity and excluded some with airflow obstruction who had no symptoms or evidence of structural lung disease.

    Before this study, clinicians had increasingly recognized that lung function tests did not capture all aspects of the complex heterogeneous disease COPD, a leading cause of disability and death. Some 392 million people globally, and 16 million in the United States, are estimated to have COPD.

    “This new diagnostic schema will likely change the way we diagnose COPD and enable its diagnosis, even in the absence of overt airflow obstruction on spirometry,” Bhatt said. “Whether treating individuals newly diagnosed this way will result in improved outcomes remains to be tested, but practitioners have already been using imaging and symptoms to diagnose COPD. This new schema sets some parameters to operationalize this.”

    In an editorial in JAMA, Francesca Polverino, M.D., Ph.D., called the study a milestone in COPD diagnosis. “COPD classification has remained overly dependent on airflow limitation as the main diagnostic criterion,” Polverino wrote. “What truly sets this reclassification apart is its groundbreaking assertion that airflow obstruction is no longer a requirement for a COPD diagnosis.”

    In the system proposed by Bhatt and colleagues, airflow obstruction remains the major criterion for COPD. “However, what makes this model significantly more inclusive and reflective of clinical COPD diversity are the minor criteria, which are split between imaging and symptom-based factors,” said Polverino, a professor at the Baylor College of Medicine, Houston, Texas.

    Bhatt is corresponding author of the study, “A new multidimensional diagnostic approach for chronic obstructive pulmonary disease,” and Edwin K. Silverman, M.D., Ph.D., Brigham and Women’s Hospital, Boston, Massachusetts, and James D. Crapo, M.D., National Jewish Health, Denver, Colorado, are co-senior authors. Other UAB authors include Mark Dransfield and Sandeep Bodduluri, UAB Department of Medicine Division of Pulmonary, Allergy and Critical Care Medicine; and Arie Nakhmani, UAB School of Engineering Department of Electrical and Computer Engineering.

    The study includes 52 authors from 24 universities and institutions in the United States and Canada.

    At UAB, Bhatt works in the Division of Pulmonary, Allergy and Critical Care Medicine.

    Source:

    University of Alabama at Birmingham

    Journal reference:

    Bhatt, S. P., et al. (2025). A Multidimensional Diagnostic Approach for Chronic Obstructive Pulmonary Disease. JAMA. doi.org/10.1001/jama.2025.7358.

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  • Genomic and phenotypic characterization of six multidrug-resistant Acinetobacter pittii isolates

    Genomic and phenotypic characterization of six multidrug-resistant Acinetobacter pittii isolates

    Characterization and relatedness of the isolates

    The susceptibility profiles of six clinical A. pittii isolates are presented in Table 1. All isolates were susceptible to aminoglycosides, tetracyclines and fluoroquinolones. All isolates were susceptible to ceftolazone/tazobactam, colistin, ampicillin/sulbactam, trimethoprim/sulfamethoxazole and nitrofurantoin; and resistant to ampicillin, first generation cephalosporin cefazolin, 3rd generation cephalosporins ceftriaxone and cefotaxime and aztreonam. Two isolates (AP290R and AP5092) were intermediate to piperacillin/tazobactam and resistant amoxicillin/clavulanic acid; only one isolate (AP290R) was resistant to all carbapenems tested and had elevated levels of ceftazidime (8 ug/ml).

    Table 1 Resistance profile of the six A. pittii studied isolates. MIC (minimal inhibitory concentration) as determined by sensititre. Abbreviations: AMK (amikacin), AMP (ampicillin), A/S2 (ampicillin/sulbactam 2:1 ratio), AUGC (amoxicillin/clavulanic acid constant 2), CRO (ceftriaxone), ATM (aztreonam), CIP (ciprofloxacin), C/T (ceftolozane/tazobactam 4), CZA (ceftazidime/avibactam), DOR (doripenem), ETP (ertapenem), CZ (cefazolin), FEP (cefepime), CTX (cefotaxime), GEN (gentamicin), IMI (imipenem), LEVO (levofloxacin), MEM (meropenem), MIN (minocycline), NIT (nitrofurantoin), P/T4 (piperacillin/tazobactam constant 4), SXT (trimethoprim/sulfamethoxazole), TAZ (ceftazidime), TET (tetracycline), TGC (tigecycline), and TOB (tobramycin). R, resistant; S, susceptible; I, intermediate. Interpretations are given according to CLSI M100 2025: performance standards for antimicrobial susceptibility testing for acinetobacter species.

    The six A. pittii isolates and reference strain ATCC19606 were analyzed by FT-IR to determine phenotypic similarity. No clusters (indicating similar isolates) were evident (Fig. 1A). To determine whether FT-IR could distinguish between A. pittii and A. baumannii, we added 11 A. baumannii strains, belonging to different sequence types (STs), to the FT-IR analysis. Still no clusters were identified, and A. pittii isolates were not always more similar to each other than to A. baumannii isolates (Fig. 1B).

    Fig. 1

    FT-IR analysis. (A). A dendrogram representing six A. pittii studied isolates and the reference strain ATCC19606. The automatic cut-off was used. (B). A dendrogram representing six A. pittii isolates, ATCC19606 and 11 randomly chosen A. baumannii strains from different STs. The automatic cut-off was used. Red indicates A. baumannii, black indicates A. pittii. MLST Pasteur type presented in right column.

    All 6 A. pittii strains were sequenced and their genomes were analyzed. The isolates belonged to different STs (Table 2) with different KL types. We constructed a phylogenetic tree based on pangenome analysis (Supplementary Fig. 1). The tree revealed distinct separation, with consistent and even distances observed between each isolate. Next, we conducted core genome alignment of the six A. pittii isolates compared to 64 publicly available complete genomes of A. pittii (Supplementary Table 1) from different countries and different years. The genomes represent a temporal range spanning from 2011 to 2024, allowing for examination of potential genomic changes over nearly three decades. This analysis placed AP5092 and MML4 (isolated in 2023, Hong Kong) on one branch close to each other. Other four isolates were located on a second branch, with AP5047 and AP290R most closely related to each other (Fig. 2). Isolate AP290R most close to isolate HCG18 isolated in Mexico in 2023.

    Table 2 Characteristics of the six A. pittii studied isolates, their ST (Pasteur and Oxford scheme) and KL types. (ST stands for sequence type; KL stands for K locus type).
    Fig. 2
    figure 2

    Phylogenetic tree of six A. pittii isolates together with 64 publicly available genomes of A. pittii.

    Antibiotic resistance genes

    Genomic analysis revealed the presence of several antimicrobial resistance determinants among the isolates (Table 3).

    Table 3 CARD analysis of the six A. pittii studied isolates. Values indicate the percent similarity to the best hit in the CARD database.

    All isolates carried at least two genes conferring β-lactam resistance: a variant of ampC cephalosporinase (ADC) and a variant of OXA-type β-lactamase. Notably, isolate AP290R carried three blaOXA genes – blaOXA−272, blaOXA−255 and blaOXA−72 carbapenemases. Correspondingly, this was the only isolate to display carbapenem resistance.

    In addition, all six study isolates harbored genes conferring quinolone resistance (adeF and abaQ), efflux pump components (abeS, adeF and adaQ), and a gene involved in colistin resistance (lpsB). Three isolates (AP4773, AP4968, and AP5092) contained a single putative aminoglycoside resistance gene, ant(3’’)-IId, with relatively low sequence homology (69%) to the closest match in the Comprehensive Antibiotic Resistance Database (CARD).

    Virulence studies

    In vitro phenotype

    We next evaluated characteristics of the A. pittii isolates which are classically associated with bacterial virulence – growth, motility and biofilm formation. A. baumannii reference strain ATCC19606 served as a reference strain. The growth of all isolates was similar to that of the control strain (p > 0.05; Supplementary Fig. 2). Three A. pittii isolates demonstrated significantly higher motility than the control stain (p < 0.0001) (Fig. 3A), and four isolates produced significantly less biofilm (p < 0.001) (Fig. 3B).

    Fig. 3
    figure 3

    In vitro phenotype of six A. pittii studied isolates. (A) Motility. Columns show average length of tentacle formation for each isolate. (B) Biofilm formation. Quantification of biofilm mass by crystal violet. (*) p-value < 0.001 compared to ATCC19606 values, bar represents standard error mean (SEM). (C) Survival of A. pittii isolates in 80% normal human serum (NHS) and heat inactivated NHS (as a control, strains were grown without serum in BHI medium and their growth was measured). Bar represents standard error mean (SEM). Each isolate is represented in a different color. ATCC19606 used as reference strain.

    All A. pittii isolates were serum sensitive (Fig. 3C), displaying either death (4/6 isolates) or reduced growth (2/6 isolates) after 4 h exposure to NHS. Heat inactivation of the complement system reduced the serum sensitivity of 5/6 isolates (except for AP5091), with one isolate (AP5092) displaying full resistance to the inactivated serum.

    In vivo virulence

    We next evaluated the virulence of the A. pittii isolates in vivo, using killing assay in Z. morio larvae. In this model, AP290R exhibited high virulence potential (Fig. 4), killing 70% of infected Z. morio larvae within 24 h. The other A. pittii strains were less lethal, with a 10%−20% lethality rate 24 h post infection and a 25%−35% lethality rate 7 days post infection.

    Fig. 4
    figure 4

    In vivo virulence of six A. pittii studied isolates. Kaplan- Meier survival curves for Z. morio larvae (30 per group) infected with 1 × 107 CFU of each isolate of A. pittii. G257 – Acinetobacter baumannii clinical strain used as reference.

    Virulence factors

    AP290R possessed the largest number of virulence genes, and AP4773 and AP5092 – the smallest. Nine virulence genes (cpaA, entE, gspDE1E2FINO, bauCDF, pilBCFGHMTU2D, pbpG, lpxABCL, barB, lbsB) were present in all 6 isolates (Fig. 5). These genes are related to various virulence functions, including biofilm formation, adherence, coagulation (cpaA), siderophore biosynthesis (entE), motility, and others. Several differences in genomic content were evident. The cluster of three genes – pilA, pilQ (surface motility) and basI (siderophore biosynthesis) – was missing from AP290R, AP4773, AP4968 and AP5091. However, only pilA was missing in isolate AP5092, and only basI was missing in isolate AP5047. The iron acquisition gene barA was missing in AP5047.

    Fig. 5
    figure 5

    Heatmap of virulome analysis of six A. pittii studied isolates. Comparison of genomes to the virulence factor database (VFDB) was complete, the existence of genes represented by blue color, the absence in white. Hierarchical clustering of the isolates based on the presence or absence of the virulence factors shown at the top. .

    Plasmid content

    Whole genome analysis revealed that two A. pittii isolates carried plasmids. Properties of these plasmids are described in Table 4 and the specific ORFs – in Supplementary Table 3. Plasmid p290R (Fig. 6A) carried ten hypothetical proteins and 4 genes of known function: ydhP (associated with glycosidase and hydrolase activity), azoR1 (azoreductaze), gcvA (regulates the glycine cleavage system, transcriptional activator), and most significantly – the carbapenemase blaOXA−72 gene. The much larger plasmid p5092 (Fig. 6C) carried 119 genes, among them genes involved in different metabolic pathways, transporters and transcriptional regulators, and several insertion sequences (ISAba46, ISAba22, ISAba23, ISAha3, ISAcsp3, ISAba26 and IS1301), and 79 hypothetical proteins.

    Table 4 Properties of the plasmids pAP290R and pAP5092.
    Fig. 6
    figure 6

    Plasmid analysis. Circular maps of plasmid pAP290R from isolate AP290R (A) and pAP5092 from isolate AP5092 (C). The open reading frames are marked along the map in blue. tRNA genes found only in pAP5092 are indicated in pink. The blaOXA-72 gene found in pAP290R is indicated in red. Phylogenetic analysis of A. pittii plasmids pAP290R (B) and pAP5092 (D). Scale indicates branch length (nucleotide substitution per site). Plasmid maps were generated via Proksee.

    BLASTn analysis revealed a significant number of comparable plasmids within the public database, all reported in Acinetobacter spp. From this pool, we selected the ten most closely related plasmids for each of the plasmids (pAP5092 and pAP290R) and constructed a phylogenetic tree (Fig. 6B, D). The plasmid closest to pAP290R was pSU8507_OXA-2 (accession number LC777725.1) isolated from A. pittii in Japan in 2023, followed by 5 closely related plasmids from the US, China and Spain isolated in 2017–2021 (Fig. 6B). The plasmid closest to pAP5092 found in the database was pML4_1 (accession number CP118934.1) isolated from A. pittii in Hong Kong in 2023 (Fig. 6D). Additional information regarding accession numbers, year and country of isolation can be found in Supplementary Table 2.

    Plasmid pAP290R contained the blaOXA−72 gene (an OXA-24 family carbapenemase). To test the inter-species transferability of this plasmid, it was extracted from A. pittii AP290R and electroporated it into AB2142, a carbapenem-susceptible A. baumannii strain. Plasmid pAP290R conferred resistance to beta-lactams and carbapenems (Supplementary Tables 4 and Supplementary Fig. 3). However, resistance to ceftazidime in AP290R seems to be intrinsic; it was not transferred to AB2142 by the pAP290R plasmid.

    Crucially, the plasmid also significantly increased the virulence of AB2142 (Fig. 7), suggesting that it contributes to the virulence of AP290R, raising the possibility that some of the hypothetical genes it carries are in fact virulence factors.

    Fig. 7
    figure 7

    Kaplan- Meier survival curves for Z. morio larvae (30 per group) infected with 1 × 107 CFU of AB2142 – not virulent A. baumannii strain, AP290R -study strain and AB2142 containing plasmid from AP290R.

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  • Cats Show Alzheimer's Changes; MS Lesions Start Early; Contested Paper Retracted – MedPage Today

    1. Cats Show Alzheimer’s Changes; MS Lesions Start Early; Contested Paper Retracted  MedPage Today
    2. Scientists make Alzheimer’s breakthrough during cat study  The Independent
    3. ‘Striking similarities’ between feline dementia and Alzheimer’s disease – study  Vet Times
    4. Cats with dementia show brain changes similar to Alzheimer’s in humans  News-Medical
    5. Cats show Alzheimer’s markers similar to humans, study finds  Straight Arrow News

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  • Gaming the cancer-immunity cycle by synchronizing treatment schedules – USC Viterbi

    Gaming the cancer-immunity cycle by synchronizing treatment schedules – USC Viterbi

    Image Credit: IPAM UCLA Mathematics of Cancer Workshop, with speaker Professor Paul Newton

    When it comes to matters of life and death, could human survival depend on our mastery of game strategy?

    For biologists, evolutionary game theory is a way of studying how different traits or behaviors evolve in a population over time, impacting the probability of a population’s survival in relation to the strategies present in other competing populations. This creates a constantly shifting balance – comparable to a dynamic and ever-changing version of rock-paper-scissors – in which strategy is a matter of timing and knowing your opponent.

    A research team led by Paul Newton, professor of aerospace and mechanical engineering, mathematics, and quantitative and computational biology at USC Viterbi School of Engineering, has published a new paper in PNAS demonstrating how principles of game theory can be applied to advance cancer therapy.

    The authors of the paper have developed a mathematical model that taps into the dynamics of the cancer-immunity cycle, predicting the competition of cancer cells, healthy cells, and immune system cells (T-cells). The insights developed from the model have the potential to allow medical practitioners to effectively “game” the cycle – synchronizing treatment schedules based on the battles taking place in the human body.

    “You can think of a tumor as an ecosystem consisting of cancer cells competing with healthy cells,” said Newton. “Chemotherapy and immunotherapy are essentially attempts to steer the evolution of the tumor in a beneficial way. But that’s not how oncologists have typically framed approaches to treatment.”

    The three players in the cancer-immunity cycle evolutionary game: Cancer cells, Healthy cells, and T cells

    The three players in the cancer-immunity cycle evolutionary game: Cancer cells, Healthy cells, and T cells

    The new paradigm proposed by the paper will seem shocking to some – after all, we’re used to thinking in terms of eliminating cancer cells, not trying to get the tumor on our side. The trouble is, the elimination method rarely works; the cells that are most sensitive to the chemotherapy will be killed off, while those that have developed resistance via mutations will survive. Those resistant cells regrow, leading to cancer recurrence.

    “The motivation of our model is to develop an evolutionary game theory model which incorporates this selection dynamics of these competing cell populations,” said Newton. “Of course, we want to reduce the size of the tumor by killing some of the sensitive cells – but if you kill all of them, then the resistant cells are going to take over.”

    As war games go, this is among the more complex. The immune system is an ally that requires careful management, as T cell populations start to attack the cancer cells and shape the rise and decline of different subpopulations of cells. In Newton’s framework, cancer cells act as defectors in a population dynamics game, while healthy cells act as cooperators, and the immune system serves as a dynamic regulator that modulates the rules of the game through feedback.

    “Our thinking about the cyclical process of how cancer cells interact with T cells was influenced by Daniel S. Chen and Ira Mellman’s influential paper ‘Oncology meets immunology: the cancer-immunity cycle,’” Newton explained. “We set out to ask a series of important questions that build upon this foundation. What are the benefits of synchronizing chemotherapy and immunotherapy schedules with the cycle, as predicted by mathematical modelling? And could this strategic timing of treatment enable lower doses with the same – or greater – positive impact as standard doses?”

    The work conducted by Newton’s team represents one of the first comprehensive mathematical models to treat the cancer-immunity cycle as a dynamic, game-theoretic system. If validated in patient populations, the findings could reshape how oncologists schedule combination therapies – not just based on standard cycles or tolerance, but on personalized biological rhythms.

    Measuring the exact period of a patient’s cancer-immunity cycle remains a challenge. But advances in real-time immune-monitoring – via circulating tumor DNA, immune profiling, or imaging – may soon make it possible. Newton’s team envisions future clinical protocols that use sparse data collection and statistical inference to approximate the cycle and adjust therapy in real time. “We’re not just fighting cancer we’re negotiating with it,” said Newton. “And timing is everything.”

    Published on August 12th, 2025

    Last updated on August 12th, 2025

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  • Cambridge study reveals critical flaw in blood pressure readings — and how to fix it

    Cambridge study reveals critical flaw in blood pressure readings — and how to fix it

    © Friends Stock – stock.adobe.com

    First introduced in 1881 by Austrian-Jewish physician Samuel Siegfried Karl von Basch, and brought into broad U.S. use at the turn of the 20th century by neurosurgeon Harvey Cushing, M.D., the inflatable cuff, or sphygmomanometer, has changed little in more than a century.

    Now, University of Cambridge researchers say the familiar test may be missing thousands, even millions, of cases of high blood pressure.

    Published August 12 in PNAS Nexus, a new study reveals a physical quirk in the gold-standard auscultatory method that can cause systolic pressure readings to register lower than they really are. As a result, as many as 30% of patients with systolic hypertension could go undiagnosed.

    High blood pressure — a leading risk factor for premature death — often shows no symptoms until serious complications strike. That makes accurate readings essential.

    The physics behind the error

    In the auscultatory method, the cuff inflates around the upper arm to stop blood flow. As it deflates, clinicians listen for Korotkoff sounds — the telltale taps that signal blood is once again moving through the artery — to determine systolic and diastolic pressures.

    While overestimation of diastolic pressure is well understood, underestimation of systolic pressure has been harder to explain.

    “We have a good understanding of why diastolic pressure is overestimated,” said co-author Kate Bassil, of the University’s engineering department. “But why systolic pressure is underestimated has been a bit of a mystery.”

    Using a custom-built model, the team showed that when the cuff fully closes the artery, pressure in the vessels downstream drops to a steady, low level. This low pressure delays the artery’s reopening as the cuff deflates, meaning the first Korotkoff sound — and the systolic reading — comes later than it should.

    Meta-analyses indicate that cuff-based devices can underestimate systolic blood pressure by close to 6 mmHg on average, which is enough to miss roughly one in three cases of systolic hypertension.

    Because automated devices are validated against manual auscultatory measurements, the same error often carries over to newer technologies.

    “Pretty much every clinician knows blood pressure readings are sometimes wrong, but no one could explain why they are being underestimated — there’s a real gap in understanding,” said co-author Anurag Agarwal, a professor in Cambridge’s Department of Engineering.

    What’s the fix?

    Researchers say the solution might be as simple as adjusting technique.

    One promising option: raising the patient’s arm before inflating the cuff. This simple step reduces venous pressure in the limb, creating a more predictable downstream pressure. Because the degree of underestimation is tied to downstream pressure, having a consistent, known value makes it easier to adjust the reading accurately.

    Plus, the change wouldn’t require any new equipment, only a slight modification to the existing auscultatory protocol.

    In practice, it could be combined with a short rest period before measurement to stabilize pressures and ensure repeatability.

    For longer-term improvements, the team envisions integrating correction factors directly into blood pressure devices. New or updated models could use patient-specific data — age, arm circumference, body mass index or pulse wave velocity — to estimate downstream pressure and automatically adjust systolic readings in real time.

    “You might not even need new devices, just changing how the measurement is done could make it more accurate,” said Agarwal.

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  • Old Parkinson’s medication offers new hope for tuberculosis treatment

    Old Parkinson’s medication offers new hope for tuberculosis treatment

    A medication developed in the 1950s to treat Parkinson’s disease may offer a powerful new tool in the fight against tuberculosis (TB), according to new research from the University of British Columbia.

    Published in npj Antimicrobials & Resistance, the study found that benztropine, a drug used to manage tremors in patients with Parkinson’s, can dramatically reduce levels of TB-causing bacteria by boosting the body’s natural immune response.

    TB is the world’s deadliest infectious disease, typically affecting the lungs and causing an estimated 1.3 million deaths each year. Treatment requires a months-long regimen of multiple antibiotics, which can have serious side effects and is increasingly challenged by the emergence of drug-resistant bacterial strains.

    New approaches for treating tuberculosis are urgently needed. By enhancing immune function rather than targeting the bacteria, this could be a powerful tool against drug-resistant TB. And, it’s a compound that has already proven safe in people with Parkinson’s.”


    Dr. Yossef Av-Gay, senior author, professor of infectious diseases, UBC faculty of medicine

    Tuberculosis is particularly difficult to treat because the bacteria responsible, Mycobacterium tuberculosis, is able to infect and survive within the very immune cells designed to destroy pathogens, known as macrophages.

    While antibiotics work by killing the bacteria directly, benztropine functions through an alternative approach that supercharges immune cells to fight back. The drug blocks a receptor on macrophages that TB bacteria exploit, allowing the cells to regain their ability to kill the bacterial invaders.

    The researchers say treatments that enhance the body’s natural defences, known as host-directed therapies, could offer significant benefits in the fight against TB.

    “Because these therapies don’t directly target the bacteria, they’re far less likely to drive drug resistance,” said lead author Dr. Henok Sahile, a postdoctoral researcher in UBC’s faculty of medicine. “They can also work in combination with existing antibiotics to improve treatment outcomes or help in cases where antibiotics fail.”

    To identify benztropine, the research team screened a library of more than 240 U.S. Food and Drug Administration-approved drugs by testing each compound on immune cells infected with TB.

    Benztropine emerged as a standout candidate, capable of significantly reducing TB bacterial counts in experiments with both human and mouse immune cells. The researchers then tested benztropine in mice infected with TB, with oral treatment leading to a 70 per cent reduction in bacterial load in the lungs-comparable to some current TB treatments.

    The drug showed similar effectiveness in a separate mouse model of Salmonella infection, suggesting its potential as a treatment for a wide range of pathogens.

    Because benztropine is already approved for use in humans, the researchers say the findings could accelerate its path to clinical testing for TB and other infections.

    “Repurposing existing drugs is one of the fastest and most cost-effective ways to bring new treatments to patients,” said Dr. Av-Gay. “With benztropine, we already understand the safety profile and pharmacology, which means we can move more quickly toward clinical trials.”

    The interdisciplinary research team involved microbiologists, immunologists and infectious disease experts at UBC’s Life Sciences Institute, as well as collaborators at the Vaccine and Infectious Disease Organization at the University of Saskatchewan.

    This study was supported by the Canadian Institutes of Health Research.

    Source:

    University of British Columbia

    Journal reference:

    Sahile, H. A., et al. (2025). The Parkinson’s drug benztropine possesses histamine receptor 1-dependent host-directed antimicrobial activity against Mycobacterium tuberculosis. npj Antimicrobials and Resistance. doi.org/10.1038/s44259-025-00143-x.

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